| Definition | Acaryochloris marina MBIC11017 chromosome, complete genome. |
|---|---|
| Accession | NC_009925 |
| Length | 6,503,724 |
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The map label for this gene is hemR [H]
Identifier: 158336543
GI number: 158336543
Start: 3438840
End: 3441263
Strand: Reverse
Name: hemR [H]
Synonym: AM1_3407
Alternate gene names: 158336543
Gene position: 3441263-3438840 (Counterclockwise)
Preceding gene: 158336544
Following gene: 158336542
Centisome position: 52.91
GC content: 48.72
Gene sequence:
>2424_bases TTGTTAACCTCAGATGACTGTCCCCTGGATGTCACTGCTGATGTCACGACTGGAGTAGAACCAACCGTCCCAACGGTTAT TACGGCTGAGGGTATTCCTGACATTACAGAAATAGAGTTGCCCATATCAGATGCCCAACTCTTATCTCAAGAGAGTCCTG ATGAAGCCGATCTCCCTGCTGCAGAAGAGGAGGCAGCGCCGACTGACACCGTGGATGAAGAAGTAGAGCTGGAAATTACA GTGACTGGCACGCGGACGCCACGGGCCATTCAACTCTCTCCAGCCAATGTCACTGTCATCAAAGCGGAGGAGCTACAGCG TCAGTTAGGCCAAGATATTCGGGATTTAATCCGCTATGAGCCAGGGGTAAGCGTGAATGAAGATGAGACCTATGGCGCAA CGGATTACAACATTCGCGGTTTAGAACGCAATCGAATTTTGCTGCAGGTGGATGGGATTCGACTCCCCACCTTTTTTGAA TTTGGCAGTTCGATTTTAGGGCGCGATTTTGTCGATGTGGGTTCAGTACAGACGACGGAAATTATTCGAGGCCCCGCCTC TGCGCTCTATGGGAGTGATGCCTTAGGAGGGGTGGTCAGCTACCTAACCCCAGACCCCAGTGACCTATTGGCATTAACAG ATCGCGATTACTACATTAGCGGGTCTACCCAGTTTCGAAGTTCAAATTCCGGGTTTTCGGGTACGGGCACCGTTGCCTTT CGGGCCACGGACAATCTGTCTGGATTAGTGCGCTTTACCCATCGCGAAAACACCGAGCGGGATAATAATGCCGAGGATCG ATTTGAAGATCCGTTTTTCGGGGTGACCAATAATGTATTGGGCAAGCTGGAATTTAAGATCAATGACTATAATACCGTCC TGCTTACAGGTGAATATTTCAATGAAGCGGGTGACTTCGATACAGCAGTCGATAATCTTAACCTCCCCTTAGCCTTTCCT GGCATAACGATTCTGAGCGATGATACCGATACGGAAACGACGCGATCGCGCTTTAGTATCGCTTACAAATTTGACAATCC TGAAAGTGAAAGTTTCTTACAATTTGGTCGAGTCCAGTTCTACTATCAGGAATCGGATTACCAAGAAACCCGCACTAGAA ATGATATTTTTGCCAATCCCTTTGTGCCACCACCCTTTACTCCGCCCCCAGCCCGACGGTTTCGAGAGTTAAATAACCTG TTCGTTGAAGACATTATTGGTGGCGATATCCAGTTGCGGAGTGATTTTCGCACGGGCAGCGTCGCTCATAAACTCACCTA TGGATTAGATATTTCTAGCACCTTTAACCAACGGATTCGAGATGGACAGCGCATTAACTTAGATACGGGTGCCGTCTCCA ACCGAGTTGGACCGGATGCGTTTCCAATCAAAGACTTTCCTGATTCCGACACCCTGCGTATCGGAGTTTATCTACAAGAT GAAATTGAATTTGGCGAAGGCCGATTTACGGTTATTCCAGGACTGCGCTTTGACTACTACAGTCTGACAACCCAACCGGA TGCTCTCTTCTTCAATAATCCTGGTGCTGAGGCGACTGACTTAAATGATTCGGCCCTGTCTCCCAGCTTAGGCTTGGTCT ACAAGGTCACTCCAGAAATTGCCTTAGTCGGTCGATATGCTCGGGGGTTTCGGGGACCCAACTACATTGAAATCAATAGC GGTTTTTCTAACCCAGAAAGCGGATATCGCACCATTTCTAACCCTAATCTAGAGCCAGAAACCAGTCATACCTTTGAACT AGGGGTTAAAGGAGCCTTTCCACGGGGTACCTTTGGCGTGACCGGGTTCTACAGCATCTATGACAATTTTATCTTTGGGG CTGCGGAAGGTAGCACCGCAGGCACAGAACCTGCAGGATGTTTCCCACCCTTTACGCCAGGATGTGTGCAGGTATTTCAA TCTCAAAATCTGGAGCAGGTCCGTATTTATGGAATTGAAGCTCAAGGGGAATATCGTTTCAGCTCCGAGCCCCATGGATT CCGAATCTTTGGGGGGCTAGCCTGGATTATTGGCGATGATGATCAAAATAATCAGCCTTTGGAAACTGTGAATCCCTTTG AAGCGGTTGTGGGATTAGGGTATCGAGCGCCAGAAGATCAATGGGGGGCAGAGTTGATTGGTACCTTTGTGGGTACTGCT CGTGTAGATTCCGAACCAGAAGATTTTATTCCGGGAGGGTTTGCAGTGGTTGACTTGACGGGTTTTGTCAAAGTTACCCC GAACCTCAGTCTCCGAGGCGGAATCTACAATATATTCGATGCGGAATATGTGCGCTATGCGGATGCCCGCAGACTCAATA ATGAAACGAACAATACCACCACCGATCCGACGTTTGGTCAGCGGCGGGCTCGCATTACCCAACCTGGCATTAATTTCGGG GTTGGCCTGACGTTTGAATTCTAG
Upstream 100 bases:
>100_bases ACTCCTTACAGGTGCTGGTATGCTTAATGCTCAGCCAGTCTTGTCCCAAGTTGAAGATAAACCGTTAGACATAACAAAAC AGTCAAACCAAACACGCTGT
Downstream 100 bases:
>100_bases GCATATGGCACTTTTTCTGAAGGCAGCAGAGTTCACCCAGCTTTGTCAGCAGGGTCAAATAGAGTCTTCGTCTAGCACCG GATTAGATCGCTCAACTCTG
Product: TonB-dependent outer membrane receptor family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 807; Mature: 807
Protein sequence:
>807_residues MLTSDDCPLDVTADVTTGVEPTVPTVITAEGIPDITEIELPISDAQLLSQESPDEADLPAAEEEAAPTDTVDEEVELEIT VTGTRTPRAIQLSPANVTVIKAEELQRQLGQDIRDLIRYEPGVSVNEDETYGATDYNIRGLERNRILLQVDGIRLPTFFE FGSSILGRDFVDVGSVQTTEIIRGPASALYGSDALGGVVSYLTPDPSDLLALTDRDYYISGSTQFRSSNSGFSGTGTVAF RATDNLSGLVRFTHRENTERDNNAEDRFEDPFFGVTNNVLGKLEFKINDYNTVLLTGEYFNEAGDFDTAVDNLNLPLAFP GITILSDDTDTETTRSRFSIAYKFDNPESESFLQFGRVQFYYQESDYQETRTRNDIFANPFVPPPFTPPPARRFRELNNL FVEDIIGGDIQLRSDFRTGSVAHKLTYGLDISSTFNQRIRDGQRINLDTGAVSNRVGPDAFPIKDFPDSDTLRIGVYLQD EIEFGEGRFTVIPGLRFDYYSLTTQPDALFFNNPGAEATDLNDSALSPSLGLVYKVTPEIALVGRYARGFRGPNYIEINS GFSNPESGYRTISNPNLEPETSHTFELGVKGAFPRGTFGVTGFYSIYDNFIFGAAEGSTAGTEPAGCFPPFTPGCVQVFQ SQNLEQVRIYGIEAQGEYRFSSEPHGFRIFGGLAWIIGDDDQNNQPLETVNPFEAVVGLGYRAPEDQWGAELIGTFVGTA RVDSEPEDFIPGGFAVVDLTGFVKVTPNLSLRGGIYNIFDAEYVRYADARRLNNETNNTTTDPTFGQRRARITQPGINFG VGLTFEF
Sequences:
>Translated_807_residues MLTSDDCPLDVTADVTTGVEPTVPTVITAEGIPDITEIELPISDAQLLSQESPDEADLPAAEEEAAPTDTVDEEVELEIT VTGTRTPRAIQLSPANVTVIKAEELQRQLGQDIRDLIRYEPGVSVNEDETYGATDYNIRGLERNRILLQVDGIRLPTFFE FGSSILGRDFVDVGSVQTTEIIRGPASALYGSDALGGVVSYLTPDPSDLLALTDRDYYISGSTQFRSSNSGFSGTGTVAF RATDNLSGLVRFTHRENTERDNNAEDRFEDPFFGVTNNVLGKLEFKINDYNTVLLTGEYFNEAGDFDTAVDNLNLPLAFP GITILSDDTDTETTRSRFSIAYKFDNPESESFLQFGRVQFYYQESDYQETRTRNDIFANPFVPPPFTPPPARRFRELNNL FVEDIIGGDIQLRSDFRTGSVAHKLTYGLDISSTFNQRIRDGQRINLDTGAVSNRVGPDAFPIKDFPDSDTLRIGVYLQD EIEFGEGRFTVIPGLRFDYYSLTTQPDALFFNNPGAEATDLNDSALSPSLGLVYKVTPEIALVGRYARGFRGPNYIEINS GFSNPESGYRTISNPNLEPETSHTFELGVKGAFPRGTFGVTGFYSIYDNFIFGAAEGSTAGTEPAGCFPPFTPGCVQVFQ SQNLEQVRIYGIEAQGEYRFSSEPHGFRIFGGLAWIIGDDDQNNQPLETVNPFEAVVGLGYRAPEDQWGAELIGTFVGTA RVDSEPEDFIPGGFAVVDLTGFVKVTPNLSLRGGIYNIFDAEYVRYADARRLNNETNNTTTDPTFGQRRARITQPGINFG VGLTFEF >Mature_807_residues MLTSDDCPLDVTADVTTGVEPTVPTVITAEGIPDITEIELPISDAQLLSQESPDEADLPAAEEEAAPTDTVDEEVELEIT VTGTRTPRAIQLSPANVTVIKAEELQRQLGQDIRDLIRYEPGVSVNEDETYGATDYNIRGLERNRILLQVDGIRLPTFFE FGSSILGRDFVDVGSVQTTEIIRGPASALYGSDALGGVVSYLTPDPSDLLALTDRDYYISGSTQFRSSNSGFSGTGTVAF RATDNLSGLVRFTHRENTERDNNAEDRFEDPFFGVTNNVLGKLEFKINDYNTVLLTGEYFNEAGDFDTAVDNLNLPLAFP GITILSDDTDTETTRSRFSIAYKFDNPESESFLQFGRVQFYYQESDYQETRTRNDIFANPFVPPPFTPPPARRFRELNNL FVEDIIGGDIQLRSDFRTGSVAHKLTYGLDISSTFNQRIRDGQRINLDTGAVSNRVGPDAFPIKDFPDSDTLRIGVYLQD EIEFGEGRFTVIPGLRFDYYSLTTQPDALFFNNPGAEATDLNDSALSPSLGLVYKVTPEIALVGRYARGFRGPNYIEINS GFSNPESGYRTISNPNLEPETSHTFELGVKGAFPRGTFGVTGFYSIYDNFIFGAAEGSTAGTEPAGCFPPFTPGCVQVFQ SQNLEQVRIYGIEAQGEYRFSSEPHGFRIFGGLAWIIGDDDQNNQPLETVNPFEAVVGLGYRAPEDQWGAELIGTFVGTA RVDSEPEDFIPGGFAVVDLTGFVKVTPNLSLRGGIYNIFDAEYVRYADARRLNNETNNTTTDPTFGQRRARITQPGINFG VGLTFEF
Specific function: This protein is involved in the initial step of iron uptake by binding hemin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=140, Percent_Identity=35.7142857142857, Blast_Score=84, Evalue=4e-17, Organism=Escherichia coli, GI1790405, Length=128, Percent_Identity=35.15625, Blast_Score=70, Evalue=5e-13, Organism=Escherichia coli, GI1786344, Length=481, Percent_Identity=23.0769230769231, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR011276 - InterPro: IPR010949 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 89001; Mature: 89001
Theoretical pI: Translated: 4.06; Mature: 4.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.1 %Met (Translated Protein) 0.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.1 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTSDDCPLDVTADVTTGVEPTVPTVITAEGIPDITEIELPISDAQLLSQESPDEADLPA CCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCEEEEECCCHHHHHCCCCCCCCCCCC AEEEAAPTDTVDEEVELEITVTGTRTPRAIQLSPANVTVIKAEELQRQLGQDIRDLIRYE CCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHHHCC PGVSVNEDETYGATDYNIRGLERNRILLQVDGIRLPTFFEFGSSILGRDFVDVGSVQTTE CCCCCCCCCCCCCCCCEEEEECCCEEEEEECCEECCHHHHHHHHHHCCCCCCCCCCEEHH IIRGPASALYGSDALGGVVSYLTPDPSDLLALTDRDYYISGSTQFRSSNSGFSGTGTVAF HHCCCHHHHCCCHHHHHHHHHCCCCCCCEEEEECCCEEECCCCEECCCCCCCCCCEEEEE RATDNLSGLVRFTHRENTERDNNAEDRFEDPFFGVTNNVLGKLEFKINDYNTVLLTGEYF EECCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCEEEEEEEECCCEEEEEECHHH NEAGDFDTAVDNLNLPLAFPGITILSDDTDTETTRSRFSIAYKFDNPESESFLQFGRVQF CCCCCCHHHHHCCCCCEECCCEEEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHCCEEE YYQESDYQETRTRNDIFANPFVPPPFTPPPARRFRELNNLFVEDIIGGDIQLRSDFRTGS EEECCCHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC VAHKLTYGLDISSTFNQRIRDGQRINLDTGAVSNRVGPDAFPIKDFPDSDTLRIGVYLQD EEEEEEECCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE EIEFGEGRFTVIPGLRFDYYSLTTQPDALFFNNPGAEATDLNDSALSPSLGLVYKVTPEI CEECCCCCEEEECCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCE ALVGRYARGFRGPNYIEINSGFSNPESGYRTISNPNLEPETSHTFELGVKGAFPRGTFGV EEEEHHHHCCCCCCEEEECCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCCCCC TGFYSIYDNFIFGAAEGSTAGTEPAGCFPPFTPGCVQVFQSQNLEQVRIYGIEAQGEYRF CCHHHHHHCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCEEE SSEPHGFRIFGGLAWIIGDDDQNNQPLETVNPFEAVVGLGYRAPEDQWGAELIGTFVGTA CCCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHE RVDSEPEDFIPGGFAVVDLTGFVKVTPNLSLRGGIYNIFDAEYVRYADARRLNNETNNTT ECCCCCHHCCCCCEEEEEEEEEEEECCCCEECCCEEEECCCHHHHHHHHHHHCCCCCCCC TDPTFGQRRARITQPGINFGVGLTFEF CCCCCCCCCCEECCCCCCCCEEEEEEC >Mature Secondary Structure MLTSDDCPLDVTADVTTGVEPTVPTVITAEGIPDITEIELPISDAQLLSQESPDEADLPA CCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCEEEEECCCHHHHHCCCCCCCCCCCC AEEEAAPTDTVDEEVELEITVTGTRTPRAIQLSPANVTVIKAEELQRQLGQDIRDLIRYE CCCCCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHHHCC PGVSVNEDETYGATDYNIRGLERNRILLQVDGIRLPTFFEFGSSILGRDFVDVGSVQTTE CCCCCCCCCCCCCCCCEEEEECCCEEEEEECCEECCHHHHHHHHHHCCCCCCCCCCEEHH IIRGPASALYGSDALGGVVSYLTPDPSDLLALTDRDYYISGSTQFRSSNSGFSGTGTVAF HHCCCHHHHCCCHHHHHHHHHCCCCCCCEEEEECCCEEECCCCEECCCCCCCCCCEEEEE RATDNLSGLVRFTHRENTERDNNAEDRFEDPFFGVTNNVLGKLEFKINDYNTVLLTGEYF EECCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCEEEEEEEECCCEEEEEECHHH NEAGDFDTAVDNLNLPLAFPGITILSDDTDTETTRSRFSIAYKFDNPESESFLQFGRVQF CCCCCCHHHHHCCCCCEECCCEEEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHCCEEE YYQESDYQETRTRNDIFANPFVPPPFTPPPARRFRELNNLFVEDIIGGDIQLRSDFRTGS EEECCCHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC VAHKLTYGLDISSTFNQRIRDGQRINLDTGAVSNRVGPDAFPIKDFPDSDTLRIGVYLQD EEEEEEECCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE EIEFGEGRFTVIPGLRFDYYSLTTQPDALFFNNPGAEATDLNDSALSPSLGLVYKVTPEI CEECCCCCEEEECCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCE ALVGRYARGFRGPNYIEINSGFSNPESGYRTISNPNLEPETSHTFELGVKGAFPRGTFGV EEEEHHHHCCCCCCEEEECCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCCCCC TGFYSIYDNFIFGAAEGSTAGTEPAGCFPPFTPGCVQVFQSQNLEQVRIYGIEAQGEYRF CCHHHHHHCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCEEE SSEPHGFRIFGGLAWIIGDDDQNNQPLETVNPFEAVVGLGYRAPEDQWGAELIGTFVGTA CCCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHE RVDSEPEDFIPGGFAVVDLTGFVKVTPNLSLRGGIYNIFDAEYVRYADARRLNNETNNTT ECCCCCHHCCCCCEEEEEEEEEEEECCCCEECCCEEEECCCHHHHHHHHHHHCCCCCCCC TDPTFGQRRARITQPGINFGVGLTFEF CCCCCCCCCCEECCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1425573 [H]