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The map label for this gene is pchR [H]

Identifier: 158336535

GI number: 158336535

Start: 3429319

End: 3430389

Strand: Reverse

Name: pchR [H]

Synonym: AM1_3399

Alternate gene names: 158336535

Gene position: 3430389-3429319 (Counterclockwise)

Preceding gene: 158336536

Following gene: 158336534

Centisome position: 52.74

GC content: 48.18

Gene sequence:

>1071_bases
ATGTCAGACTGGCGTCTCCCAGGTCATACGAACGATACACGCTTACATCATGCTGACACCAGCGACGATGTCCAAGTGAT
CGCGCCACATTTAGGTCAAGGCTATATGCAAGAGATTTTTTTGCGGGACGATCTGTCCTTAATGATTCTGGACTATACTC
TGGATCGCCCGCTGCTCTTGGATGGAGCTGGAGACTCGAACATTGCCGAATTTGAATTTCAGTTAGAAGGCCCCCAGGCC
GGGAAAAGTATCTTTTTCCCTTATTTTGGGTTTCAGGATTTGGGATTTAAGGCCCATCATACCCGGTTCTTTAAGGTCGA
AGTCCTTTTCAAATCGGACAGCTTTACTCCCTATTTCTTAGCTTTTATGGAGCGCTTGCAAACACCGCTGCAACAACTGT
CTGCAGAAGTCATTCATACTTGCTGTCGCAATTTCACAGGCCGCTTTGGCGGCTCCACAGAGCAAGCCCTCAAACTATTG
ATGACTACAGCACGCAAACCGCGTTTACAAAAACGTTTTGAACATATCGTTCCTAGCGGTCTATGCACCAGCCTGACCAG
CATCGATTTTGCTAGAAGTAGCCCCATTAATAGTGAGATGTATCGTCTGATTGAGCAGATCCTGAGTTGTCCCTATCGAG
GGGCTCATCGACGCTCCTATTTGGAAGCCAAGGCGATGGAATTAGTGGCTCAGCGATTAGCTGTAATGATTGATCCTAAG
GACTATATGGATGCTGAAGATTTGGCCGCCATTTACCAAGCAGAAGAAATTCTACGTTTGAATTTGGATCTGCCTCCCTC
CATTGAAACCTTGGCACGATGGGTCGGTTTAAATCGCCTGAAACTCAACCAAGGATTTGCTCAGGTTTACGGTACCACCC
CATTCGGGTACTTACGCAGCTGTCGCATGAATCTAGCCCAGCATTTACTCTTAACCGGCAATCTGTCGATTGAGGGCGTG
GCTGGTCGGGTCGGCTATACCAGTCGCAGTCGGTTTGCTACCGCTTTTCGTAAGCAGTTTGGCATTAACCCTAAAACCTT
CCAGGTTCATGCCTGGCAACGCGCCAGCTAA

Upstream 100 bases:

>100_bases
TACAAAATAGGTCAGTCATGTAAAAATGAAAATTATTCTCAATTAATAACCAGCTTGACATCTAAGGTCCTGCATAATGA
AACCTTTAGTTTTGAATCGG

Downstream 100 bases:

>100_bases
ATAATGCGTTTGGGGCGCAAAAATTCTGTTGTGCCCCAGTAATCTAACTGAAAATATTTATCTTCAAGCAAGCTGAATTT
GGGTCATGAGACATCAGCTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MSDWRLPGHTNDTRLHHADTSDDVQVIAPHLGQGYMQEIFLRDDLSLMILDYTLDRPLLLDGAGDSNIAEFEFQLEGPQA
GKSIFFPYFGFQDLGFKAHHTRFFKVEVLFKSDSFTPYFLAFMERLQTPLQQLSAEVIHTCCRNFTGRFGGSTEQALKLL
MTTARKPRLQKRFEHIVPSGLCTSLTSIDFARSSPINSEMYRLIEQILSCPYRGAHRRSYLEAKAMELVAQRLAVMIDPK
DYMDAEDLAAIYQAEEILRLNLDLPPSIETLARWVGLNRLKLNQGFAQVYGTTPFGYLRSCRMNLAQHLLLTGNLSIEGV
AGRVGYTSRSRFATAFRKQFGINPKTFQVHAWQRAS

Sequences:

>Translated_356_residues
MSDWRLPGHTNDTRLHHADTSDDVQVIAPHLGQGYMQEIFLRDDLSLMILDYTLDRPLLLDGAGDSNIAEFEFQLEGPQA
GKSIFFPYFGFQDLGFKAHHTRFFKVEVLFKSDSFTPYFLAFMERLQTPLQQLSAEVIHTCCRNFTGRFGGSTEQALKLL
MTTARKPRLQKRFEHIVPSGLCTSLTSIDFARSSPINSEMYRLIEQILSCPYRGAHRRSYLEAKAMELVAQRLAVMIDPK
DYMDAEDLAAIYQAEEILRLNLDLPPSIETLARWVGLNRLKLNQGFAQVYGTTPFGYLRSCRMNLAQHLLLTGNLSIEGV
AGRVGYTSRSRFATAFRKQFGINPKTFQVHAWQRAS
>Mature_355_residues
SDWRLPGHTNDTRLHHADTSDDVQVIAPHLGQGYMQEIFLRDDLSLMILDYTLDRPLLLDGAGDSNIAEFEFQLEGPQAG
KSIFFPYFGFQDLGFKAHHTRFFKVEVLFKSDSFTPYFLAFMERLQTPLQQLSAEVIHTCCRNFTGRFGGSTEQALKLLM
TTARKPRLQKRFEHIVPSGLCTSLTSIDFARSSPINSEMYRLIEQILSCPYRGAHRRSYLEAKAMELVAQRLAVMIDPKD
YMDAEDLAAIYQAEEILRLNLDLPPSIETLARWVGLNRLKLNQGFAQVYGTTPFGYLRSCRMNLAQHLLLTGNLSIEGVA
GRVGYTSRSRFATAFRKQFGINPKTFQVHAWQRAS

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 40547; Mature: 40416

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDWRLPGHTNDTRLHHADTSDDVQVIAPHLGQGYMQEIFLRDDLSLMILDYTLDRPLLL
CCCCCCCCCCCCCEEEECCCCCCCEEECCCCCCHHHHHHHHCCCCEEEEEEEECCCCEEE
DGAGDSNIAEFEFQLEGPQAGKSIFFPYFGFQDLGFKAHHTRFFKVEVLFKSDSFTPYFL
ECCCCCCEEEEEEEECCCCCCCEEEECCCCCHHCCCCHHCEEEEEEEEEEECCCCCHHHH
AFMERLQTPLQQLSAEVIHTCCRNFTGRFGGSTEQALKLLMTTARKPRLQKRFEHIVPSG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCH
LCTSLTSIDFARSSPINSEMYRLIEQILSCPYRGAHRRSYLEAKAMELVAQRLAVMIDPK
HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCH
DYMDAEDLAAIYQAEEILRLNLDLPPSIETLARWVGLNRLKLNQGFAQVYGTTPFGYLRS
HHCCHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHCCCCEEECCCHHHHHCCCCHHHHHH
CRMNLAQHLLLTGNLSIEGVAGRVGYTSRSRFATAFRKQFGINPKTFQVHAWQRAS
HHHHHHHHHHEECCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC
>Mature Secondary Structure 
SDWRLPGHTNDTRLHHADTSDDVQVIAPHLGQGYMQEIFLRDDLSLMILDYTLDRPLLL
CCCCCCCCCCCCEEEECCCCCCCEEECCCCCCHHHHHHHHCCCCEEEEEEEECCCCEEE
DGAGDSNIAEFEFQLEGPQAGKSIFFPYFGFQDLGFKAHHTRFFKVEVLFKSDSFTPYFL
ECCCCCCEEEEEEEECCCCCCCEEEECCCCCHHCCCCHHCEEEEEEEEEEECCCCCHHHH
AFMERLQTPLQQLSAEVIHTCCRNFTGRFGGSTEQALKLLMTTARKPRLQKRFEHIVPSG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCH
LCTSLTSIDFARSSPINSEMYRLIEQILSCPYRGAHRRSYLEAKAMELVAQRLAVMIDPK
HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCH
DYMDAEDLAAIYQAEEILRLNLDLPPSIETLARWVGLNRLKLNQGFAQVYGTTPFGYLRS
HHCCHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHCCCCEEECCCHHHHHCCCCHHHHHH
CRMNLAQHLLLTGNLSIEGVAGRVGYTSRSRFATAFRKQFGINPKTFQVHAWQRAS
HHHHHHHHHHEECCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]