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The map label for this gene is yfmC [H]

Identifier: 158336528

GI number: 158336528

Start: 3419982

End: 3421040

Strand: Reverse

Name: yfmC [H]

Synonym: AM1_3392

Alternate gene names: 158336528

Gene position: 3421040-3419982 (Counterclockwise)

Preceding gene: 158336529

Following gene: 158336527

Centisome position: 52.6

GC content: 49.1

Gene sequence:

>1059_bases
ATGTCACTTTTTAAATTACTACTTCTAGTCATGCTGTCAGGGAGTCTACTCGCCTGCCAGCGGACCGAGCCGTCCAAAAA
TTCTCCTTCATCCGCAGAATTTGGAAGCTGTCGCACCATTACTCATGAACAGGGCAAGACCGAGATTTGTAGACAGCCGC
AACGGATTGTTGTCCTGGGTCCCTATTTACTCGAACAGGTTCTAGCTTTGGGCGCCCAGCCAGTTGGATACGCCGACCAC
TTGACGCTGCATCAAGGAGACTATAAGAAACCTAGTGAGCAAATTCCTTACTTGGGCAACCGCGTCAAAACGCAGCCTGT
TAATGTGGGTTTAGCCTATCAGCCTTCAGTAGAGGCGATTCTCAAGGCCCAACCCGATCTAATTTTGGCTCCTGATCTAG
CCACCAATCAGTACCAGGCGTTAACCCAAATTGCCCCAACCCTAAGCTTTAAAATTGAGGGCGGTAAGACCAATTTACAG
GCGATCGCCCAGGCTCTTGATCGTCGAGATCGCGCCCAGCAGCTCGTTGCTCAGAATAAACAGCAACTTCAGGCTGCTCA
GACCACCTTTCAACCTGTGGTTGCTGACCATCCAAAGGTGCTGGCGCTCAGCTCTGCTGATGCCCAGTCCTTCACGCTGA
TCAGTCATACCAACAGCTTTTGTGGTTCGTTCCTCAAAGATTTGGGCTTTCAATTGGTCTATCCAAAAGGATTAAAACCA
CAAGATTTAGAGGCTTCTCAGCATCCGACTCTTTCTATCGAAACGCTACCCCAGCTCAACGCTGCTAACTCCATCATTTT
GTTCGGTTATGATTTCAACCCCAAAGATAGCGGCACTGAGTTCAGCAACCAGCAGCTTCAACCCATCAAACAGGCATGGC
AGCAAAATGCGATCGCACAATCTCTAAAGGCCAGTAAATCCGGACGAGTCTACTTTGTCCCTGCCTATCTGTGTTTAGGT
TTACCCGGCCCCATCGGGACTGAGCTGTATCTAAACGAACTCAAGCAGCAGTTACTCACACCCCAAACTAGAAAGCATGT
GGAAGCGCAGAAATCATAA

Upstream 100 bases:

>100_bases
TCAATGTTGAATACATTTCCAGCACCAACAACTCTCGCGACTTTGGGAATGCGCCTGGTGCTCCGTTCACAATTTTAGGT
TCAGTGTCAGTGAGCTTTTG

Downstream 100 bases:

>100_bases
AAACATTGGCCTCAGCGATACTCTTTACCACTATCTGCTATCCATCTCCTTACGAGAATCCCAGCTGCTTAACCAACTGC
GACAGGAAACCGCCAAACGT

Product: iron(III) dicitrate ABC transporter

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: Ferric-citrate-binding protein [H]

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MSLFKLLLLVMLSGSLLACQRTEPSKNSPSSAEFGSCRTITHEQGKTEICRQPQRIVVLGPYLLEQVLALGAQPVGYADH
LTLHQGDYKKPSEQIPYLGNRVKTQPVNVGLAYQPSVEAILKAQPDLILAPDLATNQYQALTQIAPTLSFKIEGGKTNLQ
AIAQALDRRDRAQQLVAQNKQQLQAAQTTFQPVVADHPKVLALSSADAQSFTLISHTNSFCGSFLKDLGFQLVYPKGLKP
QDLEASQHPTLSIETLPQLNAANSIILFGYDFNPKDSGTEFSNQQLQPIKQAWQQNAIAQSLKASKSGRVYFVPAYLCLG
LPGPIGTELYLNELKQQLLTPQTRKHVEAQKS

Sequences:

>Translated_352_residues
MSLFKLLLLVMLSGSLLACQRTEPSKNSPSSAEFGSCRTITHEQGKTEICRQPQRIVVLGPYLLEQVLALGAQPVGYADH
LTLHQGDYKKPSEQIPYLGNRVKTQPVNVGLAYQPSVEAILKAQPDLILAPDLATNQYQALTQIAPTLSFKIEGGKTNLQ
AIAQALDRRDRAQQLVAQNKQQLQAAQTTFQPVVADHPKVLALSSADAQSFTLISHTNSFCGSFLKDLGFQLVYPKGLKP
QDLEASQHPTLSIETLPQLNAANSIILFGYDFNPKDSGTEFSNQQLQPIKQAWQQNAIAQSLKASKSGRVYFVPAYLCLG
LPGPIGTELYLNELKQQLLTPQTRKHVEAQKS
>Mature_351_residues
SLFKLLLLVMLSGSLLACQRTEPSKNSPSSAEFGSCRTITHEQGKTEICRQPQRIVVLGPYLLEQVLALGAQPVGYADHL
TLHQGDYKKPSEQIPYLGNRVKTQPVNVGLAYQPSVEAILKAQPDLILAPDLATNQYQALTQIAPTLSFKIEGGKTNLQA
IAQALDRRDRAQQLVAQNKQQLQAAQTTFQPVVADHPKVLALSSADAQSFTLISHTNSFCGSFLKDLGFQLVYPKGLKPQ
DLEASQHPTLSIETLPQLNAANSIILFGYDFNPKDSGTEFSNQQLQPIKQAWQQNAIAQSLKASKSGRVYFVPAYLCLGL
PGPIGTELYLNELKQQLLTPQTRKHVEAQKS

Specific function: Part of the ABC transporter complex yfmCDEF involved in citrate-dependent Fe(3+) import. Binds citrate-dependent Fe(3+) and delivers it to the surface of yfmDE (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082411, Length=300, Percent_Identity=27.3333333333333, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 38628; Mature: 38496

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFKLLLLVMLSGSLLACQRTEPSKNSPSSAEFGSCRTITHEQGKTEICRQPQRIVVLG
CCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCHHHHCCCCEEEEEC
PYLLEQVLALGAQPVGYADHLTLHQGDYKKPSEQIPYLGNRVKTQPVNVGLAYQPSVEAI
HHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEECCCHHHH
LKAQPDLILAPDLATNQYQALTQIAPTLSFKIEGGKTNLQAIAQALDRRDRAQQLVAQNK
HHCCCCEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
QQLQAAQTTFQPVVADHPKVLALSSADAQSFTLISHTNSFCGSFLKDLGFQLVYPKGLKP
HHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHCCCEEECCCCCCC
QDLEASQHPTLSIETLPQLNAANSIILFGYDFNPKDSGTEFSNQQLQPIKQAWQQNAIAQ
CCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
SLKASKSGRVYFVPAYLCLGLPGPIGTELYLNELKQQLLTPQTRKHVEAQKS
HHHHCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure 
SLFKLLLLVMLSGSLLACQRTEPSKNSPSSAEFGSCRTITHEQGKTEICRQPQRIVVLG
CHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCHHHHCCCCEEEEEC
PYLLEQVLALGAQPVGYADHLTLHQGDYKKPSEQIPYLGNRVKTQPVNVGLAYQPSVEAI
HHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEECCCHHHH
LKAQPDLILAPDLATNQYQALTQIAPTLSFKIEGGKTNLQAIAQALDRRDRAQQLVAQNK
HHCCCCEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
QQLQAAQTTFQPVVADHPKVLALSSADAQSFTLISHTNSFCGSFLKDLGFQLVYPKGLKP
HHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHCCCEEECCCCCCC
QDLEASQHPTLSIETLPQLNAANSIILFGYDFNPKDSGTEFSNQQLQPIKQAWQQNAIAQ
CCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
SLKASKSGRVYFVPAYLCLGLPGPIGTELYLNELKQQLLTPQTRKHVEAQKS
HHHHCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]