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The map label for this gene is hli [H]

Identifier: 158336498

GI number: 158336498

Start: 3396642

End: 3397688

Strand: Direct

Name: hli [H]

Synonym: AM1_3362

Alternate gene names: 158336498

Gene position: 3396642-3397688 (Clockwise)

Preceding gene: 158336495

Following gene: 158336499

Centisome position: 52.23

GC content: 43.84

Gene sequence:

>1047_bases
ATGCAAACCTATGGACAGCCCAAAGTTAACTATCCTTGGTATGCGGGCAATGCTCGTTATACAGGGTTTAGTGCCCAATT
CCTGGCTGCACATATCGGCCAAATTGCGTCGATGTGTTTCTTCGCTGGGACCTTTACTATCTTTGAACTCACTCGCTACG
ATCCCGATTTGCCGTTATACAGTCAAAACTTTGTTTGCCTACCACAATTAGCGCGCGAAGGGTTTGGAGTTGGGTCTGGC
GGAGTCATTGTAGACACCTACGTCTACTTTGCGATTGGCATGATTCACCTGTTTGCAGCGGCTGTGTTTGCGTCGGGGGC
CTTGTACCATATTGTGACTGGACCTAAGAACTTTGCGGATAGCGAGTTCCCTGGTGTAAAGCGATTTCATTTTGAATGGG
ATGATTTTGCAACCCAGGGCAGGATTTTGGGGCACCATCTTCTTTTTTTAGGAGCAGGTGCATTTTTATTTACTTTCTGG
GGAGCCACTCATGGCTTTTACGATCCAAGTATTGGAGAAGTTAGAGCAGTTATTCCACAATTTAATATAGTCAGATTATT
TAAATATGGATGGGCTATTCCCGGATTCAATCCGTTCTTTGTCGATAATCTTGAAGATGTGCAGATGGGCCATCTCTTTG
TAGCTTTTCTATTTACGATCGGTGGCGTTTTTCACATATTGATCAAACCGTGGCCTTATACTGACAGGCTGTACAAAAAA
AATGCAGATGCAATCCTGGGGTATGCCTTAGGTGGACTCGCTTTTTTAGGGTTCAATGCTTGCTATTTTGCCGCTGTCAA
CGAAATTACATTTCCACCTGAATTCTTTGGTCCTGCTTTAGAGCTAAAGTTTGGAGTTGCACCTTACTTTGCCGATACGC
TTGATATGGCCAAGGGGTCGCATTCGTCTCGCTTCTGGATTTGTAATTTTCACTATTTTTGGGGATTTTACTGTCTCCAA
GGTCATCTATTTCATGCTTTGAGAGGTATGGGATTTGATTTTCGTAATGTCCCCAAATATTTCGAGCAATTCGCTCCTGA
AGTGTAG

Upstream 100 bases:

>100_bases
CTTTGACTTTTACTCTTCAGATTTTCATGAAACGCAAGTCCTGATAAATTGAGAATTAGTCTCAATAGAATATGCAAGAT
TAGTCTGGAGAATAATCTTT

Downstream 100 bases:

>100_bases
GTGTGGGTGGAGGATATGCTCTAACGTCTGACTAGCACGCACAGTTTTAAGAGTCCGTCTTTACGGTTCCAATCGTTAAC
TCAGCGTTAGCCAGGCGTTA

Product: high light inducible protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MQTYGQPKVNYPWYAGNARYTGFSAQFLAAHIGQIASMCFFAGTFTIFELTRYDPDLPLYSQNFVCLPQLAREGFGVGSG
GVIVDTYVYFAIGMIHLFAAAVFASGALYHIVTGPKNFADSEFPGVKRFHFEWDDFATQGRILGHHLLFLGAGAFLFTFW
GATHGFYDPSIGEVRAVIPQFNIVRLFKYGWAIPGFNPFFVDNLEDVQMGHLFVAFLFTIGGVFHILIKPWPYTDRLYKK
NADAILGYALGGLAFLGFNACYFAAVNEITFPPEFFGPALELKFGVAPYFADTLDMAKGSHSSRFWICNFHYFWGFYCLQ
GHLFHALRGMGFDFRNVPKYFEQFAPEV

Sequences:

>Translated_348_residues
MQTYGQPKVNYPWYAGNARYTGFSAQFLAAHIGQIASMCFFAGTFTIFELTRYDPDLPLYSQNFVCLPQLAREGFGVGSG
GVIVDTYVYFAIGMIHLFAAAVFASGALYHIVTGPKNFADSEFPGVKRFHFEWDDFATQGRILGHHLLFLGAGAFLFTFW
GATHGFYDPSIGEVRAVIPQFNIVRLFKYGWAIPGFNPFFVDNLEDVQMGHLFVAFLFTIGGVFHILIKPWPYTDRLYKK
NADAILGYALGGLAFLGFNACYFAAVNEITFPPEFFGPALELKFGVAPYFADTLDMAKGSHSSRFWICNFHYFWGFYCLQ
GHLFHALRGMGFDFRNVPKYFEQFAPEV
>Mature_348_residues
MQTYGQPKVNYPWYAGNARYTGFSAQFLAAHIGQIASMCFFAGTFTIFELTRYDPDLPLYSQNFVCLPQLAREGFGVGSG
GVIVDTYVYFAIGMIHLFAAAVFASGALYHIVTGPKNFADSEFPGVKRFHFEWDDFATQGRILGHHLLFLGAGAFLFTFW
GATHGFYDPSIGEVRAVIPQFNIVRLFKYGWAIPGFNPFFVDNLEDVQMGHLFVAFLFTIGGVFHILIKPWPYTDRLYKK
NADAILGYALGGLAFLGFNACYFAAVNEITFPPEFFGPALELKFGVAPYFADTLDMAKGSHSSRFWICNFHYFWGFYCLQ
GHLFHALRGMGFDFRNVPKYFEQFAPEV

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystems II and I. The Prochlorales pcb genes are not related to the higher plant LHCs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 39266; Mature: 39266

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTYGQPKVNYPWYAGNARYTGFSAQFLAAHIGQIASMCFFAGTFTIFELTRYDPDLPLY
CCCCCCCCCCCCEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCC
SQNFVCLPQLAREGFGVGSGGVIVDTYVYFAIGMIHLFAAAVFASGALYHIVTGPKNFAD
CCCCEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
SEFPGVKRFHFEWDDFATQGRILGHHLLFLGAGAFLFTFWGATHGFYDPSIGEVRAVIPQ
CCCCCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCC
FNIVRLFKYGWAIPGFNPFFVDNLEDVQMGHLFVAFLFTIGGVFHILIKPWPYTDRLYKK
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHC
NADAILGYALGGLAFLGFNACYFAAVNEITFPPEFFGPALELKFGVAPYFADTLDMAKGS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEECCCHHHHHHHHHHCCC
HSSRFWICNFHYFWGFYCLQGHLFHALRGMGFDFRNVPKYFEQFAPEV
CCCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQTYGQPKVNYPWYAGNARYTGFSAQFLAAHIGQIASMCFFAGTFTIFELTRYDPDLPLY
CCCCCCCCCCCCEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCC
SQNFVCLPQLAREGFGVGSGGVIVDTYVYFAIGMIHLFAAAVFASGALYHIVTGPKNFAD
CCCCEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
SEFPGVKRFHFEWDDFATQGRILGHHLLFLGAGAFLFTFWGATHGFYDPSIGEVRAVIPQ
CCCCCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCC
FNIVRLFKYGWAIPGFNPFFVDNLEDVQMGHLFVAFLFTIGGVFHILIKPWPYTDRLYKK
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHC
NADAILGYALGGLAFLGFNACYFAAVNEITFPPEFFGPALELKFGVAPYFADTLDMAKGS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEECCCHHHHHHHHHHCCC
HSSRFWICNFHYFWGFYCLQGHLFHALRGMGFDFRNVPKYFEQFAPEV
CCCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8986795; 9526503 [H]