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The map label for this gene is xseB [H]

Identifier: 158336479

GI number: 158336479

Start: 3375865

End: 3376119

Strand: Reverse

Name: xseB [H]

Synonym: AM1_3343

Alternate gene names: 158336479

Gene position: 3376119-3375865 (Counterclockwise)

Preceding gene: 158336480

Following gene: 158336478

Centisome position: 51.91

GC content: 46.67

Gene sequence:

>255_bases
ATGAAAGGTAACAGCGATACATCGACGGCTCCCAGCGGAGTTGAACTTCCCCAAGACTGGCGGTATGAAGAGACTATCCG
CGAAGTCGAAACCATCATTACGGAAATTGAGACAGGGCAGTTAGATTTAGCTGATGTTTTTGAACGCTTTGCAGCCGCGA
TTACTTATCTGCGCCAATGTGAAGCCTTCTTAGCAGATCGACAAGGCCAAATGGAACTTCTGATCGAAGAACTGGGAGAT
GAGACCGAATTTTAA

Upstream 100 bases:

>100_bases
CAACAGTTACAAGTCGATCAAGAACTCAAGGTAGAGTTAGCAGAAGGCCACTTTACTGCTCGCGTCACGGCATTGCAGTC
TTCACCCCAGGAAGCGGATG

Downstream 100 bases:

>100_bases
GCCATCCAGCAGCTCATAGCAGGCCCCTCTCCAAAGCCGTTCGCATGAGATTTTGATGAGAAGTTATGGCAATTGACAAG
GAGTAGGGCACAATTGGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 84; Mature: 84

Protein sequence:

>84_residues
MKGNSDTSTAPSGVELPQDWRYEETIREVETIITEIETGQLDLADVFERFAAAITYLRQCEAFLADRQGQMELLIEELGD
ETEF

Sequences:

>Translated_84_residues
MKGNSDTSTAPSGVELPQDWRYEETIREVETIITEIETGQLDLADVFERFAAAITYLRQCEAFLADRQGQMELLIEELGD
ETEF
>Mature_84_residues
MKGNSDTSTAPSGVELPQDWRYEETIREVETIITEIETGQLDLADVFERFAAAITYLRQCEAFLADRQGQMELLIEELGD
ETEF

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 9576; Mature: 9576

Theoretical pI: Translated: 3.71; Mature: 3.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGNSDTSTAPSGVELPQDWRYEETIREVETIITEIETGQLDLADVFERFAAAITYLRQC
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
EAFLADRQGQMELLIEELGDETEF
HHHHHCCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKGNSDTSTAPSGVELPQDWRYEETIREVETIITEIETGQLDLADVFERFAAAITYLRQC
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
EAFLADRQGQMELLIEELGDETEF
HHHHHCCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA