Click here to switch to the map view.

The map label for this gene is yjcF [C]

Identifier: 158336440

GI number: 158336440

Start: 3335959

End: 3336978

Strand: Direct

Name: yjcF [C]

Synonym: AM1_3304

Alternate gene names: 158336440

Gene position: 3335959-3336978 (Clockwise)

Preceding gene: 158336439

Following gene: 158336443

Centisome position: 51.29

GC content: 49.71

Gene sequence:

>1020_bases
ATGAGTCAGACTCAGATCGAAAGTGGTTTAAGCCATGCTGATTTACTGCAGCTTGTATTGCGTGGTTCTGATGTTTGGAA
TCAGTGGCGTACTGAAAACTCCCATGAGAGTATTAACCTGCCTCTGGCAGACCTCAGCGATGTCAGCCTTAGTAATGCCA
ATCTCAGCCATATCAACTTCAGCTTTGCCATCCTCGAAGGGACCGATTTAAGTGGTGCTGATCTTAGAGGTACCGATCTG
AGTGAAGCGAATCTAAATAATGCCCACCTTGCCCGTGCCAATCTCAAAGGTGCCAAAATTTCGGATGAAACGCAGATTGA
TCCGAAATGGAGGTTAGTCCATGTATTAGTGACAGAGGGGGGAGAGACCAAAGATCTCTGCAACGTTGACCTGCGTGCCG
CCAATTTGCGGGATGCCATCCTCAACAGTGCTGATCTGAGTGGGGTGAACCTTAGTTGGTCTGACCTTTGCGAGGCTAAC
CTCAGTGATGCCATCTTGAGGGATGCGAATCTGATTTTGGCGATGCTTGAGCGTGCCAATCTCAATGGTGCGAACCTCAG
CAATGCCAATCTTCGCAGTGCGAACTTGAGTTATACCAACCTCAGCAGTGCAGACCTCTTCGGTGCTGATCTGTTTGTTG
CCAACTTGAGCAGTGCCAACCTGCGGGGAGCTGACTTCAATGGTGCGAACCTCAGCAACGCTAATTTGGATAGTGCCGAT
CTCAGCAATGCGAATCTCAGCAATGCCAACCTGATCGGTGCTGATCTGAGTCATGTGAATCTCAGCAACGCCAGTCTCCG
AGGCTCGAACTTTAGCAATGTGAATCTCAGCAATGCCAACCTAGACGGTGCCGACTTGAGCAATGCCAATTTCCGAGGGA
CGAACCTCAGTGGTGCGAATCTCAGCAATGCCAATCTGATCGACGCCGATCTTTTGGATGCCAACCTCTTCAATACCACT
CTGGATGGTATTGACCTTTTTGAGACTACGCTCATGACATCAGCTGGGGCAAGGCGATGA

Upstream 100 bases:

>100_bases
GTTGTAATTGAGTGAAATAGCATAGAAACTTAGATTAAAGTGGGTTTAAAGTAAGGAATTAGCTTAGATATCGATTTATT
TCTTCTGAAAAAAGGAATTT

Downstream 100 bases:

>100_bases
TACGAGCAAGGGTTAAAGGCTAATCCCAATCCTTACTGAGTGCCTAAAAACTTTTGGTAATCCTTGGCAATGGATTCCAC
CGCTGCTTCATAGAGACTCC

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MSQTQIESGLSHADLLQLVLRGSDVWNQWRTENSHESINLPLADLSDVSLSNANLSHINFSFAILEGTDLSGADLRGTDL
SEANLNNAHLARANLKGAKISDETQIDPKWRLVHVLVTEGGETKDLCNVDLRAANLRDAILNSADLSGVNLSWSDLCEAN
LSDAILRDANLILAMLERANLNGANLSNANLRSANLSYTNLSSADLFGADLFVANLSSANLRGADFNGANLSNANLDSAD
LSNANLSNANLIGADLSHVNLSNASLRGSNFSNVNLSNANLDGADLSNANFRGTNLSGANLSNANLIDADLLDANLFNTT
LDGIDLFETTLMTSAGARR

Sequences:

>Translated_339_residues
MSQTQIESGLSHADLLQLVLRGSDVWNQWRTENSHESINLPLADLSDVSLSNANLSHINFSFAILEGTDLSGADLRGTDL
SEANLNNAHLARANLKGAKISDETQIDPKWRLVHVLVTEGGETKDLCNVDLRAANLRDAILNSADLSGVNLSWSDLCEAN
LSDAILRDANLILAMLERANLNGANLSNANLRSANLSYTNLSSADLFGADLFVANLSSANLRGADFNGANLSNANLDSAD
LSNANLSNANLIGADLSHVNLSNASLRGSNFSNVNLSNANLDGADLSNANFRGTNLSGANLSNANLIDADLLDANLFNTT
LDGIDLFETTLMTSAGARR
>Mature_338_residues
SQTQIESGLSHADLLQLVLRGSDVWNQWRTENSHESINLPLADLSDVSLSNANLSHINFSFAILEGTDLSGADLRGTDLS
EANLNNAHLARANLKGAKISDETQIDPKWRLVHVLVTEGGETKDLCNVDLRAANLRDAILNSADLSGVNLSWSDLCEANL
SDAILRDANLILAMLERANLNGANLSNANLRSANLSYTNLSSADLFGADLFVANLSSANLRGADFNGANLSNANLDSADL
SNANLSNANLIGADLSHVNLSNASLRGSNFSNVNLSNANLDGADLSNANFRGTNLSGANLSNANLIDADLLDANLFNTTL
DGIDLFETTLMTSAGARR

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=158, Percent_Identity=37.9746835443038, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI221377802, Length=182, Percent_Identity=36.2637362637363, Blast_Score=93, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 35933; Mature: 35802

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQTQIESGLSHADLLQLVLRGSDVWNQWRTENSHESINLPLADLSDVSLSNANLSHINF
CCCHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCEEECCCCCCCCCEECCCCEEEEEE
SFAILEGTDLSGADLRGTDLSEANLNNAHLARANLKGAKISDETQIDPKWRLVHVLVTEG
EEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEEECC
GETKDLCNVDLRAANLRDAILNSADLSGVNLSWSDLCEANLSDAILRDANLILAMLERAN
CCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCC
LNGANLSNANLRSANLSYTNLSSADLFGADLFVANLSSANLRGADFNGANLSNANLDSAD
CCCCCCCCCCCEECCCEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
LSNANLSNANLIGADLSHVNLSNASLRGSNFSNVNLSNANLDGADLSNANFRGTNLSGAN
CCCCCCCCCEEEECCCCEEECCCCEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
LSNANLIDADLLDANLFNTTLDGIDLFETTLMTSAGARR
CCCCCEEEHHHHCCHHHHHHCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SQTQIESGLSHADLLQLVLRGSDVWNQWRTENSHESINLPLADLSDVSLSNANLSHINF
CCHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCEEECCCCCCCCCEECCCCEEEEEE
SFAILEGTDLSGADLRGTDLSEANLNNAHLARANLKGAKISDETQIDPKWRLVHVLVTEG
EEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEEECC
GETKDLCNVDLRAANLRDAILNSADLSGVNLSWSDLCEANLSDAILRDANLILAMLERAN
CCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCC
LNGANLSNANLRSANLSYTNLSSADLFGADLFVANLSSANLRGADFNGANLSNANLDSAD
CCCCCCCCCCCEECCCEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
LSNANLSNANLIGADLSHVNLSNASLRGSNFSNVNLSNANLDGADLSNANFRGTNLSGAN
CCCCCCCCCEEEECCCCEEECCCCEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
LSNANLIDADLLDANLFNTTLDGIDLFETTLMTSAGARR
CCCCCEEEHHHHCCHHHHHHCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]