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The map label for this gene is nirD [H]

Identifier: 158336345

GI number: 158336345

Start: 3244927

End: 3245268

Strand: Reverse

Name: nirD [H]

Synonym: AM1_3207

Alternate gene names: 158336345

Gene position: 3245268-3244927 (Counterclockwise)

Preceding gene: 158336347

Following gene: 158336344

Centisome position: 49.9

GC content: 45.32

Gene sequence:

>342_bases
ATGATTACAGCCAACCGTTGGATCACCGTTTGTTCATTAGATGCGATCGCACCTAACACGGGTGTTAATGCTCTGGTAGG
AGACAATCAGGTGGCTATTTTTCGCATTGGTGAAACCGATGAAGTCTATGCCTTAGATAACTTTGATCCCTTTAGCAAGT
CGTTTGTGATGTCGCGGGGTCTAATTGGCGATCGCAAAGGCGTCTTGAAAGTGGCCTCTCCGATTTATAAACAGAATTTT
AATCTACAAACAGGAGACTGCTTAGATAATGATGCTGTCAAGCTTGCGGTCTATCCGGCTCGGGTGGTTGATGGTCAGGT
GCAGGTACAAACAGTTGAGTAA

Upstream 100 bases:

>100_bases
CAGGGATGCAGACATGACGACCACAGCTGTATCCCCTTGTTTTTTCTTGATCCTTATTACCCAAGCTGTCATGGAACAAT
CCGTATCTACCCCGGCCCCG

Downstream 100 bases:

>100_bases
CTTGACACCCTCACCTCAATAGCTCATCAACTGCTCGTCTTCCCATGCGTTTGACATGCCCGATTCAGGTCAAGCCAACT
TTAATACAATGGCACTGACT

Product: nitrite reductase (NAD(P)H), small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MITANRWITVCSLDAIAPNTGVNALVGDNQVAIFRIGETDEVYALDNFDPFSKSFVMSRGLIGDRKGVLKVASPIYKQNF
NLQTGDCLDNDAVKLAVYPARVVDGQVQVQTVE

Sequences:

>Translated_113_residues
MITANRWITVCSLDAIAPNTGVNALVGDNQVAIFRIGETDEVYALDNFDPFSKSFVMSRGLIGDRKGVLKVASPIYKQNF
NLQTGDCLDNDAVKLAVYPARVVDGQVQVQTVE
>Mature_113_residues
MITANRWITVCSLDAIAPNTGVNALVGDNQVAIFRIGETDEVYALDNFDPFSKSFVMSRGLIGDRKGVLKVASPIYKQNF
NLQTGDCLDNDAVKLAVYPARVVDGQVQVQTVE

Specific function: Required for activity of the reductase [H]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:
GO:0008942: Nitrite reductase (NAD(P)H), small subunit, putative
GO:0016491: Nitrite reductase (NAD(P)H), small subunit, putative
GO:0042128: Nitrite reductase (NAD(P)H), small subunit, putative
GO:0051537: Nitrite reductase (NAD(P)H), small subunit, putative
GO:0055114: Nitrite reductase (NAD(P)H), small subunit, putative

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis nasE [H]

Homologues:

Organism=Escherichia coli, GI1789766, Length=106, Percent_Identity=49.0566037735849, Blast_Score=111, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012748
- InterPro:   IPR017881
- InterPro:   IPR017941 [H]

Pfam domain/function: NA

EC number: =1.7.1.4 [H]

Molecular weight: Translated: 12322; Mature: 12322

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITANRWITVCSLDAIAPNTGVNALVGDNQVAIFRIGETDEVYALDNFDPFSKSFVMSRG
CCCCCCEEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCEEEECCCCCCCHHHHHHCC
LIGDRKGVLKVASPIYKQNFNLQTGDCLDNDAVKLAVYPARVVDGQVQVQTVE
CCCCCCCEEEECCCHHHCCCCCCCCCCCCCCCEEEEEECCEECCCEEEEEEEC
>Mature Secondary Structure
MITANRWITVCSLDAIAPNTGVNALVGDNQVAIFRIGETDEVYALDNFDPFSKSFVMSRG
CCCCCCEEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCEEEECCCCCCCHHHHHHCC
LIGDRKGVLKVASPIYKQNFNLQTGDCLDNDAVKLAVYPARVVDGQVQVQTVE
CCCCCCCEEEECCCHHHCCCCCCCCCCCCCCCEEEEEECCEECCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]