Click here to switch to the map view.

The map label for this gene is ydfG [C]

Identifier: 158336269

GI number: 158336269

Start: 3160958

End: 3161701

Strand: Reverse

Name: ydfG [C]

Synonym: AM1_3131

Alternate gene names: 158336269

Gene position: 3161701-3160958 (Counterclockwise)

Preceding gene: 158336270

Following gene: 158336268

Centisome position: 48.61

GC content: 49.46

Gene sequence:

>744_bases
ATGACGTTCGATATTGCTAACAAAACCATTTTGGTTACAGGTGCTAATCGCGGCATTGGCAAAACCTTAGTGACCTCTTT
GATAGAACAGGGTGCAGCCAAAGTCTATGCCGCCGTTCGCAATCTGGATAGCGCCACTGCCCTGGTGGAAACCTATGGCG
ACAAAATTGTCCCAATTCAAATTAATTTAGGCGACGTTGATTCCATTACTGCCGCTGCTCAAATTGCATCCGATGTGCAG
ATGGTGGTGAACAATGCCGGGGCTTTCCAAGGCACCACACCTTTGGCTGAAGATGCGATCGCATCTTTGCAACTGGAAAT
GGATATCAACGTGTATGGCCTCATTCGAATGGCCCAAGCTTTTGCCCCGACTCTCAAAGCCAACGGTGGAGGAGCCTTTG
TCCAACTCAATTCCGTTGTCTCCATTAAGACCTTTGCCAACTTTGCCACCTATTCTGCGTCCAAAGCAGCTTCATATGCG
ATGACTCAAGCGTTGCGTGAGCTACTCAGCGAGCAAGGCACGAGGGTACTCAGCATTCATCCAGGTCCAATTGCAACGGA
TATGAGCAGTGCGGCTGGCCTGGGAGACATTGCCGAATCTCCCACTATAGTGGCCGATGGCATCATTGCAGCGCTCAAAA
CCGGGGAATTTCATGTCTTTCCAGACACGATGGCTCAACAAATTGGTGGCGCTTATCAAAGCTTTGCGACAAACGTTGTC
GAAGTCACGATGACCGAAGAATAA

Upstream 100 bases:

>100_bases
GGTGGAAGCGGCAATGTCCTTGCTGGAGAGCAGTTAATTTTTTTTGGCTCAACTTAGACCAATCGTTCAAAGTTTAATCT
TACCTACAGGAGACAATCCC

Downstream 100 bases:

>100_bases
GTCTTTGCAGCCAGTCAGTTGAAACTGGCTGGCCCCTCAACATTACTGGAGATTTTTATGTTGAACACCATCAAGCCAAC
AGAACAACACATCCTAATTG

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MTFDIANKTILVTGANRGIGKTLVTSLIEQGAAKVYAAVRNLDSATALVETYGDKIVPIQINLGDVDSITAAAQIASDVQ
MVVNNAGAFQGTTPLAEDAIASLQLEMDINVYGLIRMAQAFAPTLKANGGGAFVQLNSVVSIKTFANFATYSASKAASYA
MTQALRELLSEQGTRVLSIHPGPIATDMSSAAGLGDIAESPTIVADGIIAALKTGEFHVFPDTMAQQIGGAYQSFATNVV
EVTMTEE

Sequences:

>Translated_247_residues
MTFDIANKTILVTGANRGIGKTLVTSLIEQGAAKVYAAVRNLDSATALVETYGDKIVPIQINLGDVDSITAAAQIASDVQ
MVVNNAGAFQGTTPLAEDAIASLQLEMDINVYGLIRMAQAFAPTLKANGGGAFVQLNSVVSIKTFANFATYSASKAASYA
MTQALRELLSEQGTRVLSIHPGPIATDMSSAAGLGDIAESPTIVADGIIAALKTGEFHVFPDTMAQQIGGAYQSFATNVV
EVTMTEE
>Mature_246_residues
TFDIANKTILVTGANRGIGKTLVTSLIEQGAAKVYAAVRNLDSATALVETYGDKIVPIQINLGDVDSITAAAQIASDVQM
VVNNAGAFQGTTPLAEDAIASLQLEMDINVYGLIRMAQAFAPTLKANGGGAFVQLNSVVSIKTFANFATYSASKAASYAM
TQALRELLSEQGTRVLSIHPGPIATDMSSAAGLGDIAESPTIVADGIIAALKTGEFHVFPDTMAQQIGGAYQSFATNVVE
VTMTEE

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI223718074, Length=194, Percent_Identity=31.9587628865979, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI7705925, Length=192, Percent_Identity=29.1666666666667, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1787820, Length=195, Percent_Identity=27.6923076923077, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786701, Length=191, Percent_Identity=29.8429319371728, Blast_Score=63, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=198, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=214, Percent_Identity=30.3738317757009, Blast_Score=87, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6322226, Length=192, Percent_Identity=30.7291666666667, Blast_Score=65, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24643142, Length=205, Percent_Identity=31.7073170731707, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI19921754, Length=207, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI23397609, Length=195, Percent_Identity=30.2564102564103, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25667; Mature: 25536

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFDIANKTILVTGANRGIGKTLVTSLIEQGAAKVYAAVRNLDSATALVETYGDKIVPIQ
CEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEE
INLGDVDSITAAAQIASDVQMVVNNAGAFQGTTPLAEDAIASLQLEMDINVYGLIRMAQA
EECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEEECCCHHHHHHHHHH
FAPTLKANGGGAFVQLNSVVSIKTFANFATYSASKAASYAMTQALRELLSEQGTRVLSIH
HCCCEECCCCEEEEEECCEEEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCEEEEEC
PGPIATDMSSAAGLGDIAESPTIVADGIIAALKTGEFHVFPDTMAQQIGGAYQSFATNVV
CCCCCCCCHHHCCCCCCCCCCCEEHHHHHHHEECCCEEECHHHHHHHHCHHHHHHHCCEE
EVTMTEE
EEEEECC
>Mature Secondary Structure 
TFDIANKTILVTGANRGIGKTLVTSLIEQGAAKVYAAVRNLDSATALVETYGDKIVPIQ
EEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEE
INLGDVDSITAAAQIASDVQMVVNNAGAFQGTTPLAEDAIASLQLEMDINVYGLIRMAQA
EECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEEECCCHHHHHHHHHH
FAPTLKANGGGAFVQLNSVVSIKTFANFATYSASKAASYAMTQALRELLSEQGTRVLSIH
HCCCEECCCCEEEEEECCEEEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCEEEEEC
PGPIATDMSSAAGLGDIAESPTIVADGIIAALKTGEFHVFPDTMAQQIGGAYQSFATNVV
CCCCCCCCHHHCCCCCCCCCCCEEHHHHHHHEECCCEEECHHHHHHHHCHHHHHHHCCEE
EVTMTEE
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]