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The map label for this gene is kaiB [H]

Identifier: 158336259

GI number: 158336259

Start: 3150391

End: 3151209

Strand: Direct

Name: kaiB [H]

Synonym: AM1_3121

Alternate gene names: 158336259

Gene position: 3150391-3151209 (Clockwise)

Preceding gene: 158336258

Following gene: 158336260

Centisome position: 48.44

GC content: 46.52

Gene sequence:

>819_bases
GTGACTACTTTGCGATCGCAACCTCTCCCCTTTCTATATAAAGGTCTCGCCCTGTTTACACCGGGGGGAGACCTCATTTA
TTGTGTCGATCCCAGCAAACAAGGCCATTGGCATTTCCAGCTTTGTCAGGCCTTGCAAACGTTGCTGCATTTGCCAGAAC
CGCCCCTCTTTCTTGTTCCCTGCTATACGGCAACCTTAGATCGGTGGTTACATCCTCATACTCAACAGCTGCAAGTTTCA
GCTGAAGCCTATCCTCTTGTGTGGCGATATCGCAGTTTGCTTAATGTGCTCTTTGGGTTGTCGGCAGAGCATTGGCATAT
GATATCGACCCCAGTGGAAACCTGTGATGCAGCCGTTCTCAATAGCTATAAACAGCAGTTTCCACAGCTGTGGAAAAATC
ATAATTTAGTGATTCGGTTAGATCAGGTTTCAATGAGTGCTAGTCCTAACGTTGATGCTCTGGATCCTGAACAGATAGAT
CCAGTTAAACCAATGAATCCTGTGGAGACTTTACAGGTTAGCGCATCGGAGGCGGATGTGTCTCAAGGCTATGTTTTGCG
CCTATTTGTCGCTAGCCAGAATACCCGCACGAAAAGTATTTTAGAAAATCTACATCAGCTCCTCGATCAAGTGTTAGATG
TCCCCTATACCTTGAAAGTGATTGATGTAGTGAAACACCCTGAGCGCGCAGAAGCGGATCAAATTTCAGCGACTCCCACT
TTGGTTAAAGTTTGGCCACAGCCAGTACGAAGACTGGTGGGTGATCAATTAGAAACGGATAATGTGTTGCAATTGCTGGA
TGCTATAGAAACCCGCTAG

Upstream 100 bases:

>100_bases
CGAATGAAATGGCTCAAATCCTAAGAGGACGTATCTAGCCAGCATTGGAGAGGTTTGTTATAAGGTATCTGATAGGTCTC
TGGTCTAACATGGACTGCTT

Downstream 100 bases:

>100_bases
AAAAACTGATTTGTGGATGGTGTTTCAAGAAGATTAAATCCCTGAAATCTAGAGATAAGTCATTCCCTACAAATATAGGG
ATTTTTGAAGAATTCAAATT

Product: circadian clock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MTTLRSQPLPFLYKGLALFTPGGDLIYCVDPSKQGHWHFQLCQALQTLLHLPEPPLFLVPCYTATLDRWLHPHTQQLQVS
AEAYPLVWRYRSLLNVLFGLSAEHWHMISTPVETCDAAVLNSYKQQFPQLWKNHNLVIRLDQVSMSASPNVDALDPEQID
PVKPMNPVETLQVSASEADVSQGYVLRLFVASQNTRTKSILENLHQLLDQVLDVPYTLKVIDVVKHPERAEADQISATPT
LVKVWPQPVRRLVGDQLETDNVLQLLDAIETR

Sequences:

>Translated_272_residues
MTTLRSQPLPFLYKGLALFTPGGDLIYCVDPSKQGHWHFQLCQALQTLLHLPEPPLFLVPCYTATLDRWLHPHTQQLQVS
AEAYPLVWRYRSLLNVLFGLSAEHWHMISTPVETCDAAVLNSYKQQFPQLWKNHNLVIRLDQVSMSASPNVDALDPEQID
PVKPMNPVETLQVSASEADVSQGYVLRLFVASQNTRTKSILENLHQLLDQVLDVPYTLKVIDVVKHPERAEADQISATPT
LVKVWPQPVRRLVGDQLETDNVLQLLDAIETR
>Mature_271_residues
TTLRSQPLPFLYKGLALFTPGGDLIYCVDPSKQGHWHFQLCQALQTLLHLPEPPLFLVPCYTATLDRWLHPHTQQLQVSA
EAYPLVWRYRSLLNVLFGLSAEHWHMISTPVETCDAAVLNSYKQQFPQLWKNHNLVIRLDQVSMSASPNVDALDPEQIDP
VKPMNPVETLQVSASEADVSQGYVLRLFVASQNTRTKSILENLHQLLDQVLDVPYTLKVIDVVKHPERAEADQISATPTL
VKVWPQPVRRLVGDQLETDNVLQLLDAIETR

Specific function: Probable component of the kaiBC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. In the complex, it may affect the phosphorylation status of kaiC [H]

COG id: COG0526

COG function: function code OC; Thiol-disulfide isomerase and thioredoxins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kaiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013474
- InterPro:   IPR011649
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF07689 KaiB [H]

EC number: NA

Molecular weight: Translated: 30867; Mature: 30736

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLRSQPLPFLYKGLALFTPGGDLIYCVDPSKQGHWHFQLCQALQTLLHLPEPPLFLVP
CCCCCCCCCCHHHCCEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
CYTATLDRWLHPHTQQLQVSAEAYPLVWRYRSLLNVLFGLSAEHWHMISTPVETCDAAVL
CHHHHHHHHCCCCCHHEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHH
NSYKQQFPQLWKNHNLVIRLDQVSMSASPNVDALDPEQIDPVKPMNPVETLQVSASEADV
HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEECCCCCCC
SQGYVLRLFVASQNTRTKSILENLHQLLDQVLDVPYTLKVIDVVKHPERAEADQISATPT
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHCCCCCH
LVKVWPQPVRRLVGDQLETDNVLQLLDAIETR
HEEECHHHHHHHHCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTLRSQPLPFLYKGLALFTPGGDLIYCVDPSKQGHWHFQLCQALQTLLHLPEPPLFLVP
CCCCCCCCCHHHCCEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
CYTATLDRWLHPHTQQLQVSAEAYPLVWRYRSLLNVLFGLSAEHWHMISTPVETCDAAVL
CHHHHHHHHCCCCCHHEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHH
NSYKQQFPQLWKNHNLVIRLDQVSMSASPNVDALDPEQIDPVKPMNPVETLQVSASEADV
HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEECCCCCCC
SQGYVLRLFVASQNTRTKSILENLHQLLDQVLDVPYTLKVIDVVKHPERAEADQISATPT
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHCCCCCH
LVKVWPQPVRRLVGDQLETDNVLQLLDAIETR
HEEECHHHHHHHHCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA