Click here to switch to the map view.

The map label for this gene is yjcF [C]

Identifier: 158335873

GI number: 158335873

Start: 2766011

End: 2766784

Strand: Direct

Name: yjcF [C]

Synonym: AM1_2732

Alternate gene names: 158335873

Gene position: 2766011-2766784 (Clockwise)

Preceding gene: 158335872

Following gene: 158335875

Centisome position: 42.53

GC content: 49.74

Gene sequence:

>774_bases
ATGATGCAAGTAGCCGAGTTGCTGGAGCGCTACGCTGCCGGAGAAAGAGATTTTTGCGAAATAGAGTTAAAAAATGCGGA
CTTAAGCCAGCAGAATTTATCTGGCGCCACATTTATTAAGTCCAAATTAAGCCATATGAATTTGGAGAATGCCTACTTAT
ATGGGGTGAACTTCAAACACAGTTATATCGAAGATACAAACCTGGCGGGTGCCCAGCTTTGTGGCGCCAACCTATGGGGC
GTTAATTTTCAGGGTAGTGTGCTGGCAGAGGCAAACCTCAGTGATGCCTATATCCGAGGCACCTATCTCCTCAAAGCAGA
TTTGAGTAAGGTGAATCTTCAGCGAGCCAATTTGCAGCGGTCTTACCTATGGGGGGCAACCCTGAATCATGCCGATATGC
GGGACGCCAATTTAACCGGCGCAAACTTAGATTCGGCAACCTTAATGTTTGCCGATCTGAGCGAAGCCAACTGCCAAGAT
AGCTCTATGAAAGGGGCGAATTTAAGTGGGGCTTGCCTGATTGGAGCTTGCCTGGATCGCGTTAACCTGAGCCACGCCAA
CCTAAGCATGGCCGAACTCAGCGAAGCGCGAATGAAGTTTGCCCAACTGACGGACACCATTTTCCAGCAGGCAAACTTAA
GCAGCACCAATCTGGCCTACGCCCAAGTGCAGCTACAGAGACTGCAAGACGCCATTTTATCTCGCACCATTTTGCCGGAT
CAGCGGGTGGTCAACAATCTGGCCCCAGCAATGGTCGCTAGCGTCACACACTAA

Upstream 100 bases:

>100_bases
CAATCCCTGAATATTCTCTTGGAATCGGTATATTCACTCTTCTCACTCCCAGAGACCAGTGACTAAGATCGAAGCTCAGG
ATTTGAATAGGTTAAGCCCC

Downstream 100 bases:

>100_bases
TCGCCCCGGTTTGAATCAACTGGCGAATCTCTTGGCGAACTTGCATTAAGATTTTTCCCAGCTGGTTCTGCCCTTTACCA
TCTGCACCACATCCCCAATA

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MMQVAELLERYAAGERDFCEIELKNADLSQQNLSGATFIKSKLSHMNLENAYLYGVNFKHSYIEDTNLAGAQLCGANLWG
VNFQGSVLAEANLSDAYIRGTYLLKADLSKVNLQRANLQRSYLWGATLNHADMRDANLTGANLDSATLMFADLSEANCQD
SSMKGANLSGACLIGACLDRVNLSHANLSMAELSEARMKFAQLTDTIFQQANLSSTNLAYAQVQLQRLQDAILSRTILPD
QRVVNNLAPAMVASVTH

Sequences:

>Translated_257_residues
MMQVAELLERYAAGERDFCEIELKNADLSQQNLSGATFIKSKLSHMNLENAYLYGVNFKHSYIEDTNLAGAQLCGANLWG
VNFQGSVLAEANLSDAYIRGTYLLKADLSKVNLQRANLQRSYLWGATLNHADMRDANLTGANLDSATLMFADLSEANCQD
SSMKGANLSGACLIGACLDRVNLSHANLSMAELSEARMKFAQLTDTIFQQANLSSTNLAYAQVQLQRLQDAILSRTILPD
QRVVNNLAPAMVASVTH
>Mature_257_residues
MMQVAELLERYAAGERDFCEIELKNADLSQQNLSGATFIKSKLSHMNLENAYLYGVNFKHSYIEDTNLAGAQLCGANLWG
VNFQGSVLAEANLSDAYIRGTYLLKADLSKVNLQRANLQRSYLWGATLNHADMRDANLTGANLDSATLMFADLSEANCQD
SSMKGANLSGACLIGACLDRVNLSHANLSMAELSEARMKFAQLTDTIFQQANLSSTNLAYAQVQLQRLQDAILSRTILPD
QRVVNNLAPAMVASVTH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=195, Percent_Identity=29.7435897435897, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI221377802, Length=182, Percent_Identity=30.2197802197802, Blast_Score=67, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 28104; Mature: 28104

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQVAELLERYAAGERDFCEIELKNADLSQQNLSGATFIKSKLSHMNLENAYLYGVNFKH
CCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCH
SYIEDTNLAGAQLCGANLWGVNFQGSVLAEANLSDAYIRGTYLLKADLSKVNLQRANLQR
HHCCCCCCCCHHHCCCEEECCCCCCCEEEECCCCCEEEEEEEEEEECHHHHHHHHHHCHH
SYLWGATLNHADMRDANLTGANLDSATLMFADLSEANCQDSSMKGANLSGACLIGACLDR
HEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
VNLSHANLSMAELSEARMKFAQLTDTIFQQANLSSTNLAYAQVQLQRLQDAILSRTILPD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCH
QRVVNNLAPAMVASVTH
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMQVAELLERYAAGERDFCEIELKNADLSQQNLSGATFIKSKLSHMNLENAYLYGVNFKH
CCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCH
SYIEDTNLAGAQLCGANLWGVNFQGSVLAEANLSDAYIRGTYLLKADLSKVNLQRANLQR
HHCCCCCCCCHHHCCCEEECCCCCCCEEEECCCCCEEEEEEEEEEECHHHHHHHHHHCHH
SYLWGATLNHADMRDANLTGANLDSATLMFADLSEANCQDSSMKGANLSGACLIGACLDR
HEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
VNLSHANLSMAELSEARMKFAQLTDTIFQQANLSSTNLAYAQVQLQRLQDAILSRTILPD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCH
QRVVNNLAPAMVASVTH
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]