| Definition | Acaryochloris marina MBIC11017 chromosome, complete genome. |
|---|---|
| Accession | NC_009925 |
| Length | 6,503,724 |
Click here to switch to the map view.
The map label for this gene is rbpD [H]
Identifier: 158335765
GI number: 158335765
Start: 2656095
End: 2656382
Strand: Direct
Name: rbpD [H]
Synonym: AM1_2616
Alternate gene names: 158335765
Gene position: 2656095-2656382 (Clockwise)
Preceding gene: 158335762
Following gene: 158335766
Centisome position: 40.84
GC content: 47.57
Gene sequence:
>288_bases ATGACAGTTTACATCGGTAACCTATCTTATGAGGTTACAGAGGACGATCTAAGCGCAGTTTTTGCGGAATATGGAGAAGT CAAGCAGGTCAAGCTTCCTGTGGATCGTGAATCAGGTCGCAAACGTGGATTTGGATTTGTAGAAATGCAAGACGAATCTA ACGAAGAAAAAGCCATCGAAGAATTGGATGGGGCTGAGTGGATGGGCCGGACCTTAAAGGTCAACAAAGCCAAGCCTCGC ACCCCCAGACCCACTAGCAGTGGATGGGGCGGCAACCAAAGATATTAA
Upstream 100 bases:
>100_bases GGCTAGATTCAAGAAGATTTATCCTTTCGTCCTGAGTTAGTTGACTTACCTCCGCATCCCAATCTCGATACATTGTTCAT TTGATTTTTGAAGGTAAGGT
Downstream 100 bases:
>100_bases TCCAAATATCATTTATGGGGTTGAGGCAAACTCAATCCTAGCAACAGTAACTGTTGCAAGCCTCATCAGGTAAGGGTAGC GACCCCATCCTCCCTTACCT
Product: RNA-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 95; Mature: 94
Protein sequence:
>95_residues MTVYIGNLSYEVTEDDLSAVFAEYGEVKQVKLPVDRESGRKRGFGFVEMQDESNEEKAIEELDGAEWMGRTLKVNKAKPR TPRPTSSGWGGNQRY
Sequences:
>Translated_95_residues MTVYIGNLSYEVTEDDLSAVFAEYGEVKQVKLPVDRESGRKRGFGFVEMQDESNEEKAIEELDGAEWMGRTLKVNKAKPR TPRPTSSGWGGNQRY >Mature_94_residues TVYIGNLSYEVTEDDLSAVFAEYGEVKQVKLPVDRESGRKRGFGFVEMQDESNEEKAIEELDGAEWMGRTLKVNKAKPRT PRPTSSGWGGNQRY
Specific function: Unknown
COG id: COG0724
COG function: function code R; RNA-binding proteins (RRM domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 RRM (RNA recognition motif) domain [H]
Homologues:
Organism=Homo sapiens, GI35493811, Length=89, Percent_Identity=35.9550561797753, Blast_Score=77, Evalue=3e-15, Organism=Homo sapiens, GI4757926, Length=89, Percent_Identity=35.9550561797753, Blast_Score=77, Evalue=3e-15, Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=42.1052631578947, Blast_Score=74, Evalue=2e-14, Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=42.1052631578947, Blast_Score=70, Evalue=3e-13, Organism=Homo sapiens, GI5174637, Length=86, Percent_Identity=36.046511627907, Blast_Score=69, Evalue=1e-12, Organism=Homo sapiens, GI45439316, Length=86, Percent_Identity=36.046511627907, Blast_Score=68, Evalue=1e-12, Organism=Homo sapiens, GI303305009, Length=86, Percent_Identity=36.046511627907, Blast_Score=68, Evalue=1e-12, Organism=Homo sapiens, GI116734694, Length=80, Percent_Identity=33.75, Blast_Score=67, Evalue=2e-12, Organism=Homo sapiens, GI116734698, Length=80, Percent_Identity=33.75, Blast_Score=67, Evalue=2e-12, Organism=Homo sapiens, GI116734696, Length=80, Percent_Identity=33.75, Blast_Score=67, Evalue=2e-12, Organism=Homo sapiens, GI188219593, Length=86, Percent_Identity=33.7209302325581, Blast_Score=65, Evalue=1e-11, Organism=Homo sapiens, GI188219591, Length=86, Percent_Identity=33.7209302325581, Blast_Score=65, Evalue=1e-11, Organism=Homo sapiens, GI47271443, Length=77, Percent_Identity=38.961038961039, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI4507499, Length=86, Percent_Identity=32.5581395348837, Blast_Score=63, Evalue=4e-11, Organism=Homo sapiens, GI77695912, Length=86, Percent_Identity=32.5581395348837, Blast_Score=63, Evalue=5e-11, Organism=Homo sapiens, GI118600973, Length=73, Percent_Identity=34.2465753424658, Blast_Score=63, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17508587, Length=81, Percent_Identity=41.9753086419753, Blast_Score=83, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17508585, Length=78, Percent_Identity=41.025641025641, Blast_Score=81, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17508567, Length=78, Percent_Identity=43.5897435897436, Blast_Score=80, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=42.1052631578947, Blast_Score=76, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17539498, Length=84, Percent_Identity=40.4761904761905, Blast_Score=72, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17532819, Length=81, Percent_Identity=38.2716049382716, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17532817, Length=81, Percent_Identity=38.2716049382716, Blast_Score=62, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6322195, Length=81, Percent_Identity=37.037037037037, Blast_Score=60, Evalue=8e-11, Organism=Drosophila melanogaster, GI17647301, Length=78, Percent_Identity=41.025641025641, Blast_Score=75, Evalue=1e-14, Organism=Drosophila melanogaster, GI24582417, Length=87, Percent_Identity=35.632183908046, Blast_Score=74, Evalue=2e-14, Organism=Drosophila melanogaster, GI45550943, Length=87, Percent_Identity=35.632183908046, Blast_Score=74, Evalue=2e-14, Organism=Drosophila melanogaster, GI24582419, Length=87, Percent_Identity=35.632183908046, Blast_Score=74, Evalue=2e-14, Organism=Drosophila melanogaster, GI24582423, Length=87, Percent_Identity=35.632183908046, Blast_Score=74, Evalue=2e-14, Organism=Drosophila melanogaster, GI24582421, Length=87, Percent_Identity=35.632183908046, Blast_Score=74, Evalue=2e-14, Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=46.0526315789474, Blast_Score=74, Evalue=2e-14, Organism=Drosophila melanogaster, GI19920866, Length=87, Percent_Identity=35.632183908046, Blast_Score=73, Evalue=3e-14, Organism=Drosophila melanogaster, GI24582412, Length=87, Percent_Identity=35.632183908046, Blast_Score=73, Evalue=3e-14, Organism=Drosophila melanogaster, GI21358099, Length=78, Percent_Identity=38.4615384615385, Blast_Score=63, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012677 - InterPro: IPR000504 - InterPro: IPR015465 [H]
Pfam domain/function: PF00076 RRM_1 [H]
EC number: NA
Molecular weight: Translated: 10762; Mature: 10631
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: PS50102 RRM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVYIGNLSYEVTEDDLSAVFAEYGEVKQVKLPVDRESGRKRGFGFVEMQDESNEEKAIE CEEEECCCEEEECHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHH ELDGAEWMGRTLKVNKAKPRTPRPTSSGWGGNQRY HCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TVYIGNLSYEVTEDDLSAVFAEYGEVKQVKLPVDRESGRKRGFGFVEMQDESNEEKAIE EEEECCCEEEECHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHH ELDGAEWMGRTLKVNKAKPRTPRPTSSGWGGNQRY HCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]