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The map label for this gene is rpoE [H]

Identifier: 158335730

GI number: 158335730

Start: 2618430

End: 2618996

Strand: Direct

Name: rpoE [H]

Synonym: AM1_2580

Alternate gene names: 158335730

Gene position: 2618430-2618996 (Clockwise)

Preceding gene: 158335727

Following gene: 158335731

Centisome position: 40.26

GC content: 50.97

Gene sequence:

>567_bases
ATGACTGTCCAAAACACCAGTGAGGACTTGGTTTTAATCCACCAAGTGGCTGAACAGAATCAAGCCGCACTATCGATGTT
GTATGACCGATATGCAGGCATCATTTATGCGATCGCATACAAAATGCTGGGGTCCGTCGAAGAAGCCGAAGAAGTGGTCT
TGGATGTATTCGATCAAGTCTGGCGCACCGCCGCTAAATATGATCGCAGTCGCAGTCGAGTCGATTCTTGGCTATTTATG
CAGGCCCGCAGCCGCACCTTAGATCGCCTTCGCAAACGGCAGCGCCAAGCCAAGGTCGTCGAAGCTTCTACGGTAAACGC
GCCCATCGAGTCCGATACCAAAATGGCCCTGCCTGAAGAACATGCCCTGATTCAAGAACGGCGCGATCTTGTCCAAGTCG
CCATGGCCCAAATTCCACCGGAACAACAGCAGGTGATTGAGCTGGCCTATTTTCAAGGGTTATCCCAATCAGAAATTGCC
AAGCAAACTGGCCTGTCCCTCGGCACCGTCAAAACCCGAATTCGGTTGGGTTTAAGTAAGTTGCGAGGCATTCTTGATCA
ATCTTGA

Upstream 100 bases:

>100_bases
CTTCCTTTCATTCAGCAATCTGTAGGGGTATACGCTAGGGGTTGGTGATTGGATCTGTTTCTCGAAAAATTTGTTGGAAT
CACGTGAGTTTAAATCGGGA

Downstream 100 bases:

>100_bases
GGAGTAAAAAAATGCGAGAAATCTGCCCATAGACAGATCCAAAGTCATTTTGAGGACGTAATACTGGTATAGGCTTTTTC
ATCAACTCATCTCAGCATAA

Product: RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MTVQNTSEDLVLIHQVAEQNQAALSMLYDRYAGIIYAIAYKMLGSVEEAEEVVLDVFDQVWRTAAKYDRSRSRVDSWLFM
QARSRTLDRLRKRQRQAKVVEASTVNAPIESDTKMALPEEHALIQERRDLVQVAMAQIPPEQQQVIELAYFQGLSQSEIA
KQTGLSLGTVKTRIRLGLSKLRGILDQS

Sequences:

>Translated_188_residues
MTVQNTSEDLVLIHQVAEQNQAALSMLYDRYAGIIYAIAYKMLGSVEEAEEVVLDVFDQVWRTAAKYDRSRSRVDSWLFM
QARSRTLDRLRKRQRQAKVVEASTVNAPIESDTKMALPEEHALIQERRDLVQVAMAQIPPEQQQVIELAYFQGLSQSEIA
KQTGLSLGTVKTRIRLGLSKLRGILDQS
>Mature_187_residues
TVQNTSEDLVLIHQVAEQNQAALSMLYDRYAGIIYAIAYKMLGSVEEAEEVVLDVFDQVWRTAAKYDRSRSRVDSWLFMQ
ARSRTLDRLRKRQRQAKVVEASTVNAPIESDTKMALPEEHALIQERRDLVQVAMAQIPPEQQQVIELAYFQGLSQSEIAK
QTGLSLGTVKTRIRLGLSKLRGILDQS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 21366; Mature: 21235

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVQNTSEDLVLIHQVAEQNQAALSMLYDRYAGIIYAIAYKMLGSVEEAEEVVLDVFDQV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
WRTAAKYDRSRSRVDSWLFMQARSRTLDRLRKRQRQAKVVEASTVNAPIESDTKMALPEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
HALIQERRDLVQVAMAQIPPEQQQVIELAYFQGLSQSEIAKQTGLSLGTVKTRIRLGLSK
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHH
LRGILDQS
HHHHHCCC
>Mature Secondary Structure 
TVQNTSEDLVLIHQVAEQNQAALSMLYDRYAGIIYAIAYKMLGSVEEAEEVVLDVFDQV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
WRTAAKYDRSRSRVDSWLFMQARSRTLDRLRKRQRQAKVVEASTVNAPIESDTKMALPEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
HALIQERRDLVQVAMAQIPPEQQQVIELAYFQGLSQSEIAKQTGLSLGTVKTRIRLGLSK
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHH
LRGILDQS
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA