Click here to switch to the map view.

The map label for this gene is padR [H]

Identifier: 158335694

GI number: 158335694

Start: 2582420

End: 2582965

Strand: Direct

Name: padR [H]

Synonym: AM1_2545

Alternate gene names: 158335694

Gene position: 2582420-2582965 (Clockwise)

Preceding gene: 158335691

Following gene: 158335698

Centisome position: 39.71

GC content: 47.62

Gene sequence:

>546_bases
ATGACCCTTGCCCACACGATTTTGACAGTTCTATCTGAGGCTCCCCACAGCGGCTACGACCTTAGTAAGCGCTTTGAGGA
ATCAGTGAGCTGTTTTTGGAAAGCCAGTCAGCAGCAGATTTATCGAGAGTTATCCAAGATTGAAACCCAAGGCTGGGTAA
CCCATGAGCTGGTTCCCCAACAGGGCAAGCCTGATAAAAAGGTCTACCAAATTACCGAGATGGGCAAACAAGAGCTGCTG
AACTGGTATGCAGAGCCGTCCACACCGACTCCCATCCGCGAAGATTTATTAGTAAAGGTCTTGGCAGGCCCCTATGTTCC
CCGTCCACTGCTGATCCAGCAGGTCAAAGCTCGTCAAGCATTACATCAGCAACAATTGGAACGCTATCTAGAAAAGGAAG
CCTGTTTTCAACAGTTAGAAACTGTAGAGCCAGCGTTGAAGTTCCGGTATTTCACCCTTAGACGAGGGATTCGATACGAG
CGAGAATGGATTGATTGGTGCCAAGAAGTGATTGATACTCTAAAAGCAGATACCAGTTTGTACTAA

Upstream 100 bases:

>100_bases
TCGTTTATATCCAACTTGTTGATATAAAACTTGTTGAGTATTACATCGATAGCTTATACTCAACTTGTTGGATATGTCAA
CGCCACCCCATCATCAATTC

Downstream 100 bases:

>100_bases
TCCTCAGACTGTTGATGCAGACGGTGTTGCCAGAGAGTATCAACGATAATGATGAACGCCGTGGGCACACAGCCAAAGAT
CAACACGAGCACTCCCCATA

Product: PadR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MTLAHTILTVLSEAPHSGYDLSKRFEESVSCFWKASQQQIYRELSKIETQGWVTHELVPQQGKPDKKVYQITEMGKQELL
NWYAEPSTPTPIREDLLVKVLAGPYVPRPLLIQQVKARQALHQQQLERYLEKEACFQQLETVEPALKFRYFTLRRGIRYE
REWIDWCQEVIDTLKADTSLY

Sequences:

>Translated_181_residues
MTLAHTILTVLSEAPHSGYDLSKRFEESVSCFWKASQQQIYRELSKIETQGWVTHELVPQQGKPDKKVYQITEMGKQELL
NWYAEPSTPTPIREDLLVKVLAGPYVPRPLLIQQVKARQALHQQQLERYLEKEACFQQLETVEPALKFRYFTLRRGIRYE
REWIDWCQEVIDTLKADTSLY
>Mature_180_residues
TLAHTILTVLSEAPHSGYDLSKRFEESVSCFWKASQQQIYRELSKIETQGWVTHELVPQQGKPDKKVYQITEMGKQELLN
WYAEPSTPTPIREDLLVKVLAGPYVPRPLLIQQVKARQALHQQQLERYLEKEACFQQLETVEPALKFRYFTLRRGIRYER
EWIDWCQEVIDTLKADTSLY

Specific function: Negative transcriptional regulator of padC phenolic acid decarboxylase [H]

COG id: COG1695

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018309
- InterPro:   IPR005149
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03551 PadR; PF10400 Vir_act_alpha_C [H]

EC number: NA

Molecular weight: Translated: 21344; Mature: 21213

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLAHTILTVLSEAPHSGYDLSKRFEESVSCFWKASQQQIYRELSKIETQGWVTHELVPQ
CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCC
QGKPDKKVYQITEMGKQELLNWYAEPSTPTPIREDLLVKVLAGPYVPRPLLIQQVKARQA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LHQQQLERYLEKEACFQQLETVEPALKFRYFTLRRGIRYEREWIDWCQEVIDTLKADTSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Y
C
>Mature Secondary Structure 
TLAHTILTVLSEAPHSGYDLSKRFEESVSCFWKASQQQIYRELSKIETQGWVTHELVPQ
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCC
QGKPDKKVYQITEMGKQELLNWYAEPSTPTPIREDLLVKVLAGPYVPRPLLIQQVKARQA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LHQQQLERYLEKEACFQQLETVEPALKFRYFTLRRGIRYEREWIDWCQEVIDTLKADTSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Y
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]