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The map label for this gene is ldcA [C]

Identifier: 158335642

GI number: 158335642

Start: 2516706

End: 2517599

Strand: Direct

Name: ldcA [C]

Synonym: AM1_2492

Alternate gene names: 158335642

Gene position: 2516706-2517599 (Clockwise)

Preceding gene: 158335641

Following gene: 158335643

Centisome position: 38.7

GC content: 57.27

Gene sequence:

>894_bases
ATGCAGCCTTGTCAGCTCCCTCCTTTTTTACAACCCGGTGATGATCTTTGGGTGACAATGCCCAGTGGCACCCTCCGGGA
GCGGCAGGATTTTGATCAAGGTGTTGCGGTGTTGCGATCTCACTCCTACACCATCCGCCTATCCCCGAACATCACCGCCC
AGTGGGGCTATCTCGCTGGCACCGATACTCAGCGCAGACAAGCCCTAATCGAAGGACTCAAAGGCAACTACTCCGGCATT
TTTTGTGGACGGGGCGGCTATGGCGGCGCTCGACTTTTAGAAGACTGGCAATGGCCCCCTACCCCTACCAAATGGCTGGT
GGGTTTTTCCGATGTGACGGCTCTGCTCTGGGGACTGGCCACTCAGGGGATTGCTAGTGTTCACGGCCCGGTGATGACCA
CCTTGGTCCAGGAACCCGACTGGTCCCAGCAGAGACTGTTTGATTGGCTCTCTGGCCGCCCTATCCCCGCCCTAACGGGT
AAAGGCTGGGGCCAGGGCAAAGCAACTGGCATCTTATTACCCGGCAATTTAACAGTGGCAACCCACATCTTAGGAACATC
TCTCTGCCCGAAGCTAGACCAGGTGATCTTAGCCCTAGAAGATGTGGGGGAAGCGCCCTATCGGCTGGATCGGATGCTGA
CCCAATGGCGGATGAGTGGGGTATTCAAGCAGGTCAAAGGTATTGCCCTAGGGCGCTTTAGCGATTGCGAAGCCCCTACC
GGGATTCCTAGCTTAACGGTGGAAGAAGTCCTTCGCGATCGCTTGGGGGATTTAGGTATCCCCATTGTGTCGGGGTTACC
CTTTGGCCATGGCGCTCCCAACGCAGCTTTACCCGTGGGTGTTCCCGCGCAGTTAGATGGCGATCAGGGGACATTGGCCG
TTGGCGCTCCCTAG

Upstream 100 bases:

>100_bases
TGTCGCCAACAGGCCGAGCAGGAGTACTCTCTGACGGCTTTTGCCCAGCGCCTGGAGCAATGGTTTGTTAAAATCCTGTC
TCAACCCGATCAATAAATCC

Downstream 100 bases:

>100_bases
GGATCAGCTCTCAAATCTGTACGCTATCGTAAAAAGTAGAGACCATCAGGACCCTAGGCATGAACGAGCTGAGGCAGGCA
CTAGAATTAGCGACGGAAGA

Product: LD-carboxypeptidase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MQPCQLPPFLQPGDDLWVTMPSGTLRERQDFDQGVAVLRSHSYTIRLSPNITAQWGYLAGTDTQRRQALIEGLKGNYSGI
FCGRGGYGGARLLEDWQWPPTPTKWLVGFSDVTALLWGLATQGIASVHGPVMTTLVQEPDWSQQRLFDWLSGRPIPALTG
KGWGQGKATGILLPGNLTVATHILGTSLCPKLDQVILALEDVGEAPYRLDRMLTQWRMSGVFKQVKGIALGRFSDCEAPT
GIPSLTVEEVLRDRLGDLGIPIVSGLPFGHGAPNAALPVGVPAQLDGDQGTLAVGAP

Sequences:

>Translated_297_residues
MQPCQLPPFLQPGDDLWVTMPSGTLRERQDFDQGVAVLRSHSYTIRLSPNITAQWGYLAGTDTQRRQALIEGLKGNYSGI
FCGRGGYGGARLLEDWQWPPTPTKWLVGFSDVTALLWGLATQGIASVHGPVMTTLVQEPDWSQQRLFDWLSGRPIPALTG
KGWGQGKATGILLPGNLTVATHILGTSLCPKLDQVILALEDVGEAPYRLDRMLTQWRMSGVFKQVKGIALGRFSDCEAPT
GIPSLTVEEVLRDRLGDLGIPIVSGLPFGHGAPNAALPVGVPAQLDGDQGTLAVGAP
>Mature_297_residues
MQPCQLPPFLQPGDDLWVTMPSGTLRERQDFDQGVAVLRSHSYTIRLSPNITAQWGYLAGTDTQRRQALIEGLKGNYSGI
FCGRGGYGGARLLEDWQWPPTPTKWLVGFSDVTALLWGLATQGIASVHGPVMTTLVQEPDWSQQRLFDWLSGRPIPALTG
KGWGQGKATGILLPGNLTVATHILGTSLCPKLDQVILALEDVGEAPYRLDRMLTQWRMSGVFKQVKGIALGRFSDCEAPT
GIPSLTVEEVLRDRLGDLGIPIVSGLPFGHGAPNAALPVGVPAQLDGDQGTLAVGAP

Specific function: L,D-carboxypeptidase [C]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

Organism=Escherichia coli, GI1787441, Length=288, Percent_Identity=31.25, Blast_Score=108, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 31942; Mature: 31942

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPCQLPPFLQPGDDLWVTMPSGTLRERQDFDQGVAVLRSHSYTIRLSPNITAQWGYLAG
CCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCEEECCEEEC
TDTQRRQALIEGLKGNYSGIFCGRGGYGGARLLEDWQWPPTPTKWLVGFSDVTALLWGLA
CCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCCCCCCHHEEECHHHHHHHHHHHH
TQGIASVHGPVMTTLVQEPDWSQQRLFDWLSGRPIPALTGKGWGQGKATGILLPGNLTVA
HHHHHHHCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHH
THILGTSLCPKLDQVILALEDVGEAPYRLDRMLTQWRMSGVFKQVKGIALGRFSDCEAPT
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GIPSLTVEEVLRDRLGDLGIPIVSGLPFGHGAPNAALPVGVPAQLDGDQGTLAVGAP
CCCCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCEEECCC
>Mature Secondary Structure
MQPCQLPPFLQPGDDLWVTMPSGTLRERQDFDQGVAVLRSHSYTIRLSPNITAQWGYLAG
CCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCEEECCEEEC
TDTQRRQALIEGLKGNYSGIFCGRGGYGGARLLEDWQWPPTPTKWLVGFSDVTALLWGLA
CCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCCCCCCHHEEECHHHHHHHHHHHH
TQGIASVHGPVMTTLVQEPDWSQQRLFDWLSGRPIPALTGKGWGQGKATGILLPGNLTVA
HHHHHHHCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHH
THILGTSLCPKLDQVILALEDVGEAPYRLDRMLTQWRMSGVFKQVKGIALGRFSDCEAPT
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GIPSLTVEEVLRDRLGDLGIPIVSGLPFGHGAPNAALPVGVPAQLDGDQGTLAVGAP
CCCCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]