Click here to switch to the map view.

The map label for this gene is opuBB [H]

Identifier: 158335005

GI number: 158335005

Start: 1833171

End: 1833821

Strand: Direct

Name: opuBB [H]

Synonym: AM1_1844

Alternate gene names: 158335005

Gene position: 1833171-1833821 (Clockwise)

Preceding gene: 158335002

Following gene: 158335008

Centisome position: 28.19

GC content: 49.62

Gene sequence:

>651_bases
ATGGTTCTCATTGATGCCTCTCGTTATGCAGCCTCGCACCAAGAGCAAGTGATGGAGGCGATCCAACAACATCTGCTGTT
GGTGAGTGTGCCCTTAGGTTTCGCCCTCTTGATTGGCGGATATGGGGGATGGCAATGTGTCTGCTGGTCTAGACAACACT
CAACCACACTGCCGCTTGTGCTGCTGAATGTATTTAATGGACTGCGAGTTATTCCGAGTCTGGCCATCCTATTTTTGCTT
ATTCCTATCTTGGGTCTCACCTTTCAAGCTGCGGCTTTTGCCCTCTGTCTATTGGCTATTCCTCCGATTTTATTAGCGAC
GGAAGTGGGCTTTAGAACTGTTCCAGCTTCAGTTCGAGAGGTGGGAATGGCAATGGGTATGACTCCGTGGCAACTCTTTT
GTCAGGTCGATTTACCCCTTGCATTGCCCGTCATTCTTTCAGGCGTCAAAACGGCCACCCTAGAAGTGATTGCCAGTGCA
ACTTTAGCCGCGTTTATCGGTGCTGGTGGGTTAGGTTCATTTATTACCCTCGGGTTTGCCCTCAATGAACCAGCGATTTT
GTTGGTAGGGGCTATCCCAGTTGCTGGGTTGGCGCTTTTGGCAGAAGGGTTTTTAAATCGTTTGCAGCAATTACTGCGGT
TGCCTGCTTAG

Upstream 100 bases:

>100_bases
TCGGCGGTTTGTTCCCAATACAGTCTAGTCTGGAAGAAAACTAGGGTGATCGGCCCATCTGCAGGGAATATATTCAAGAA
AACGTTAGGTCGAACTGGCT

Downstream 100 bases:

>100_bases
TCATGAATGGTGCCATCTGGCATGGTTGTCCCTTTTAACAAGGCTTCATAAGGATTCGCACGACATAAATTGGCGCGGTA
CAAATTGGCACGGCACAGAT

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MVLIDASRYAASHQEQVMEAIQQHLLLVSVPLGFALLIGGYGGWQCVCWSRQHSTTLPLVLLNVFNGLRVIPSLAILFLL
IPILGLTFQAAAFALCLLAIPPILLATEVGFRTVPASVREVGMAMGMTPWQLFCQVDLPLALPVILSGVKTATLEVIASA
TLAAFIGAGGLGSFITLGFALNEPAILLVGAIPVAGLALLAEGFLNRLQQLLRLPA

Sequences:

>Translated_216_residues
MVLIDASRYAASHQEQVMEAIQQHLLLVSVPLGFALLIGGYGGWQCVCWSRQHSTTLPLVLLNVFNGLRVIPSLAILFLL
IPILGLTFQAAAFALCLLAIPPILLATEVGFRTVPASVREVGMAMGMTPWQLFCQVDLPLALPVILSGVKTATLEVIASA
TLAAFIGAGGLGSFITLGFALNEPAILLVGAIPVAGLALLAEGFLNRLQQLLRLPA
>Mature_216_residues
MVLIDASRYAASHQEQVMEAIQQHLLLVSVPLGFALLIGGYGGWQCVCWSRQHSTTLPLVLLNVFNGLRVIPSLAILFLL
IPILGLTFQAAAFALCLLAIPPILLATEVGFRTVPASVREVGMAMGMTPWQLFCQVDLPLALPVILSGVKTATLEVIASA
TLAAFIGAGGLGSFITLGFALNEPAILLVGAIPVAGLALLAEGFLNRLQQLLRLPA

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=202, Percent_Identity=36.1386138613861, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788451, Length=223, Percent_Identity=31.8385650224215, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1789033, Length=145, Percent_Identity=27.5862068965517, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 22790; Mature: 22790

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLIDASRYAASHQEQVMEAIQQHLLLVSVPLGFALLIGGYGGWQCVCWSRQHSTTLPLV
CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHH
LLNVFNGLRVIPSLAILFLLIPILGLTFQAAAFALCLLAIPPILLATEVGFRTVPASVRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
VGMAMGMTPWQLFCQVDLPLALPVILSGVKTATLEVIASATLAAFIGAGGLGSFITLGFA
HHHHHCCCHHHHEEECCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
LNEPAILLVGAIPVAGLALLAEGFLNRLQQLLRLPA
CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVLIDASRYAASHQEQVMEAIQQHLLLVSVPLGFALLIGGYGGWQCVCWSRQHSTTLPLV
CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHH
LLNVFNGLRVIPSLAILFLLIPILGLTFQAAAFALCLLAIPPILLATEVGFRTVPASVRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
VGMAMGMTPWQLFCQVDLPLALPVILSGVKTATLEVIASATLAAFIGAGGLGSFITLGFA
HHHHHCCCHHHHEEECCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
LNEPAILLVGAIPVAGLALLAEGFLNRLQQLLRLPA
CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]