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The map label for this gene is rbcL

Identifier: 158334948

GI number: 158334948

Start: 1775408

End: 1776838

Strand: Reverse

Name: rbcL

Synonym: AM1_1785

Alternate gene names: 158334948

Gene position: 1776838-1775408 (Counterclockwise)

Preceding gene: 158334950

Following gene: 158334947

Centisome position: 27.32

GC content: 49.83

Gene sequence:

>1431_bases
ATGTCCTATTCACAAACTAGAACTCAGTCAAAGGCCGGATATGATGCTGGCGTTAAAGACTACAAGCTAACCTATTACAC
GCCGGACTACACCCCAAAAGATACAGATATCCTCGCTGCCTTCCGGATGACCCCTCAACCAGGTGTTCCTCCCGAAGAAG
CTGGTGCTGCTGTTGCGGCTGAATCCTCAACAGGAACCTGGACCACTGTGTGGACTGACCTGTTAACCGATTTGGATCGA
TACAAAGGCCGTTGCTACGACATCGAAGCAGTTGCCAACGAAGATAATCAGTACATTGCCTATATTGCCTATCCCCTCGA
TTTGTTTGAGGAAGGGTCAGTCGTCAACTTGTTGACCTCCCTTGTGGGTAACGTGTTTGGTTTCAAAGCACTTCGGGCCT
TACGTCTTGAAGATATTCGTATCCCAGTTGCCTACATGAAGACCTTCCAAGGTCCTCCTCACGGAATCACGGTTGAGCGT
GACAAGATCAACAAGTATGGCCGTCCTTTGTTGGGTTGCACCATTAAGCCCAAGTTAGGTCTATCCGCGAAGAACTACGG
TAGAGCTGTTTATGAGTGTCTACGCGGTGGACTTGACTTCACTAAGGATGATGAGAACATTAACTCTCAGCCTTTTATGC
GCTGGCGTGATCGCTTCCTCTTTGTGGCTGAAGCGATTCATAAAGCCCAAGCAGAAACCGGTGAGATTAAAGGTCACTAT
CTAAACGTTACCGCTGCCACCTGTGAGGAAATGCTGAAGCGGGCTGAGTTTGCTAAAGAACTCGAAATGCCCATCATCAT
GCATGACTTTATCACTGGTGGTTTTACCGCTAACACTACTCTGTCCCACTGGTGTCGTGATAATGGTGTGCTGCTTCATA
TTCACCGAGCCATGCACGCTGTGATTGACCGTCAGAAGAACCATGGTATGCACTTCCGTGTCCTTTCGAAGTGTCTCCGC
ATGTCTGGTGGTGACCACATCCATACCGGCACGGTTGTGGGTAAGTTGGAAGGTGAAAAAGGCATCACCATGGGATTTGT
GGATCTCTTGCGTGAGAACTATGTGGAGAAAGATCTGTCTCGTGGTATCTACTTCACTCAGGACTGGGCCTCTATGGGCG
GCGTTATGGCTGTTGCCTCGGGTGGTATTCACGTTTGGCACATGCCTGCCCTAGTTGAGATCTTTGGTGATGATTCTGTG
CTCCAGTTTGGTGGTGGAACCTTGGGTCACCCTTGGGGTTGTGCACCAGGTGCAACGGCTAACCGGGTTGCGCTTGAAGC
CTGTGTCCAAGCTCGTAACGAAGGGCGCGACATGGCTCGTGAAGGTGGCGACATTCTCCGTGAAGCTGCTAAGTGGAGTC
CTGAACTGGCTGTTGCCTTAGAAGTCTGGAAAGAGATTAAGTTCGAATTCGAGGCAATGGATACAGTCTAA

Upstream 100 bases:

>100_bases
CAGGATAAAATTCAACATTTTTTGCGGGCTACCTGAAAAGTTAGCCTCAGTTGTTTTGTCCGGGATTTATCACGTTTAGA
TGAGGTTGTTCAAGAGCAAC

Downstream 100 bases:

>100_bases
TTCCCTTGAAGCCAGGGCAAAGGCTACCTTTGCCCTGAACAGATAGAGGAAGATGGACGTTCCTTTCCTTTCTCCCTTAA
CTGTTCAACGCAATATTTAA

Product: ribulose bisophosphate carboxylase

Products: NA

Alternate protein names: RuBisCO large subunit

Number of amino acids: Translated: 476; Mature: 475

Protein sequence:

>476_residues
MSYSQTRTQSKAGYDAGVKDYKLTYYTPDYTPKDTDILAAFRMTPQPGVPPEEAGAAVAAESSTGTWTTVWTDLLTDLDR
YKGRCYDIEAVANEDNQYIAYIAYPLDLFEEGSVVNLLTSLVGNVFGFKALRALRLEDIRIPVAYMKTFQGPPHGITVER
DKINKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAIHKAQAETGEIKGHY
LNVTAATCEEMLKRAEFAKELEMPIIMHDFITGGFTANTTLSHWCRDNGVLLHIHRAMHAVIDRQKNHGMHFRVLSKCLR
MSGGDHIHTGTVVGKLEGEKGITMGFVDLLRENYVEKDLSRGIYFTQDWASMGGVMAVASGGIHVWHMPALVEIFGDDSV
LQFGGGTLGHPWGCAPGATANRVALEACVQARNEGRDMAREGGDILREAAKWSPELAVALEVWKEIKFEFEAMDTV

Sequences:

>Translated_476_residues
MSYSQTRTQSKAGYDAGVKDYKLTYYTPDYTPKDTDILAAFRMTPQPGVPPEEAGAAVAAESSTGTWTTVWTDLLTDLDR
YKGRCYDIEAVANEDNQYIAYIAYPLDLFEEGSVVNLLTSLVGNVFGFKALRALRLEDIRIPVAYMKTFQGPPHGITVER
DKINKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAIHKAQAETGEIKGHY
LNVTAATCEEMLKRAEFAKELEMPIIMHDFITGGFTANTTLSHWCRDNGVLLHIHRAMHAVIDRQKNHGMHFRVLSKCLR
MSGGDHIHTGTVVGKLEGEKGITMGFVDLLRENYVEKDLSRGIYFTQDWASMGGVMAVASGGIHVWHMPALVEIFGDDSV
LQFGGGTLGHPWGCAPGATANRVALEACVQARNEGRDMAREGGDILREAAKWSPELAVALEVWKEIKFEFEAMDTV
>Mature_475_residues
SYSQTRTQSKAGYDAGVKDYKLTYYTPDYTPKDTDILAAFRMTPQPGVPPEEAGAAVAAESSTGTWTTVWTDLLTDLDRY
KGRCYDIEAVANEDNQYIAYIAYPLDLFEEGSVVNLLTSLVGNVFGFKALRALRLEDIRIPVAYMKTFQGPPHGITVERD
KINKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAIHKAQAETGEIKGHYL
NVTAATCEEMLKRAEFAKELEMPIIMHDFITGGFTANTTLSHWCRDNGVLLHIHRAMHAVIDRQKNHGMHFRVLSKCLRM
SGGDHIHTGTVVGKLEGEKGITMGFVDLLRENYVEKDLSRGIYFTQDWASMGGVMAVASGGIHVWHMPALVEIFGDDSVL
QFGGGTLGHPWGCAPGATANRVALEACVQARNEGRDMAREGGDILREAAKWSPELAVALEVWKEIKFEFEAMDTV

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultan

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:
GO:0000287: Ribulose bisphosphate carboxylase large chain
GO:0004497: Ribulose bisphosphate carboxylase large chain
GO:0009536: Ribulose bisphosphate carboxylase large chain
GO:0009853: Ribulose bisphosphate carboxylase large chain
GO:0015977: Ribulose bisphosphate carboxylase large chain
GO:0015979: Ribulose bisphosphate carboxylase large chain
GO:0016491: Ribulose bisphosphate carboxylase large chain
GO:0016829: Ribulose bisphosphate carboxylase large chain
GO:0016984: Ribulose bisphosphate carboxylase large chain
GO:0019253: Ribulose bisphosphate carboxylase large chain
GO:0046872: Ribulose bisphosphate carboxylase large chain
GO:0055114: Ribulose bisphosphate carboxylase large chain

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type I subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBL_ACAM1 (B0CCC1)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001516120.1
- ProteinModelPortal:   B0CCC1
- SMR:   B0CCC1
- GeneID:   5680601
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_1785
- HOGENOM:   HBG405441
- OMA:   YTPDYTP
- ProtClustDB:   PRK04208
- BioCyc:   AMAR329726:AM1_1785-MONOMER
- GO:   GO:0009536
- GO:   GO:0009853
- HAMAP:   MF_01338
- InterPro:   IPR020878
- InterPro:   IPR020888
- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017444
- Gene3D:   G3DSA:3.20.20.110
- Gene3D:   G3DSA:3.30.70.150

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N; SSF51649 RuBisCO_large; SSF54966 RuBisCO_large

EC number: =4.1.1.39

Molecular weight: Translated: 52982; Mature: 52851

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS00157 RUBISCO_LARGE

Important sites: ACT_SITE 176-176 ACT_SITE 295-295 BINDING 124-124 BINDING 174-174 BINDING 178-178 BINDING 296-296 BINDING 328-328 BINDING 380-380

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYSQTRTQSKAGYDAGVKDYKLTYYTPDYTPKDTDILAAFRMTPQPGVPPEEAGAAVAA
CCCCHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEE
ESSTGTWTTVWTDLLTDLDRYKGRCYDIEAVANEDNQYIAYIAYPLDLFEEGSVVNLLTS
CCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEEEHHHHCCCCHHHHHHH
LVGNVFGFKALRALRLEDIRIPVAYMKTFQGPPHGITVERDKINKYGRPLLGCTIKPKLG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEHHHHHHCCCCEEEEEECCCCC
LSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAIHKAQAETGEIKGHY
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
LNVTAATCEEMLKRAEFAKELEMPIIMHDFITGGFTANTTLSHWCRDNGVLLHIHRAMHA
EEEEHHHHHHHHHHHHHHHHHCCCEEEHHHHCCCCCCCCHHHHHHCCCCEEEEHHHHHHH
VIDRQKNHGMHFRVLSKCLRMSGGDHIHTGTVVGKLEGEKGITMGFVDLLRENYVEKDLS
HHHHHCCCCCHHHHHHHHHHCCCCCEEEECEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
RGIYFTQDWASMGGVMAVASGGIHVWHMPALVEIFGDDSVLQFGGGTLGHPWGCAPGATA
CCCEEEECHHHHCCEEEEECCCEEEEEHHEEHHHHCCCCEEEECCCCCCCCCCCCCCCCH
NRVALEACVQARNEGRDMAREGGDILREAAKWSPELAVALEVWKEIKFEFEAMDTV
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SYSQTRTQSKAGYDAGVKDYKLTYYTPDYTPKDTDILAAFRMTPQPGVPPEEAGAAVAA
CCCHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEE
ESSTGTWTTVWTDLLTDLDRYKGRCYDIEAVANEDNQYIAYIAYPLDLFEEGSVVNLLTS
CCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEEEHHHHCCCCHHHHHHH
LVGNVFGFKALRALRLEDIRIPVAYMKTFQGPPHGITVERDKINKYGRPLLGCTIKPKLG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEHHHHHHCCCCEEEEEECCCCC
LSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAIHKAQAETGEIKGHY
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
LNVTAATCEEMLKRAEFAKELEMPIIMHDFITGGFTANTTLSHWCRDNGVLLHIHRAMHA
EEEEHHHHHHHHHHHHHHHHHCCCEEEHHHHCCCCCCCCHHHHHHCCCCEEEEHHHHHHH
VIDRQKNHGMHFRVLSKCLRMSGGDHIHTGTVVGKLEGEKGITMGFVDLLRENYVEKDLS
HHHHHCCCCCHHHHHHHHHHCCCCCEEEECEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
RGIYFTQDWASMGGVMAVASGGIHVWHMPALVEIFGDDSVLQFGGGTLGHPWGCAPGATA
CCCEEEECHHHHCCEEEEECCCEEEEEHHEEHHHHCCCCEEEECCCCCCCCCCCCCCCCH
NRVALEACVQARNEGRDMAREGGDILREAAKWSPELAVALEVWKEIKFEFEAMDTV
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA