Click here to switch to the map view.

The map label for this gene is dcyD [H]

Identifier: 158334799

GI number: 158334799

Start: 1603357

End: 1604352

Strand: Reverse

Name: dcyD [H]

Synonym: AM1_1636

Alternate gene names: 158334799

Gene position: 1604352-1603357 (Counterclockwise)

Preceding gene: 158334800

Following gene: 158334797

Centisome position: 24.67

GC content: 51.41

Gene sequence:

>996_bases
ATGCCATTTCACCATTTACCCCGTCGATCCCTAGGATTTTTCCCAACCCCGATTGTTGAGCTACCTCGACTGTCCCAAGT
GCTGGATGGACCCAGAATTTTGATGAAGCGGGATGATCAAACCGGGTTGGCTCTGGGAGGCAACAAGACCCGAAAGCTAG
AATTCTTAATCGCAGAAGCGTTACACCAACACTGCGATTGTGTACTTACGGCAGGGGCATCTCAATCGAATCATTGTCGA
CAAACGGCGGCAGCCGCAGCCATGGTTGGACTGGACTGCCATCTAGTTTTAGGAGGGACTCCACCCGATCGAGCTAATGG
GAATTTATTGCTGGATGAGCTTTTGGGTGCTCAAATTCATTGGACAGGGACGAATCGCAAAGGGGAGCAGTTGAGTGCGA
TCGCATCCCAGCTACAAGCCCAAGGTCGGCATCCCTACGTCATTCCCTATGGTGGGTCTAATGCGTTGGGGGCAGTCGGT
TTTGTGGCGGCGATGGCTGAATTGCAGCAACAGCTTCAGGCAATGTCAGTATCCGTGGATGCGATTGTGTTCGCGTCCAG
TTCAGGGGGGACACAGGCGGGGCTGACCGTTGGCAAATCGCTCTTGGCGATTGATGTAGAGCTGATTGGCATTCGTATTG
ATAAGGCTGAAGATCAGCAGTTGAGTTACCAAGATCAATTGGCGGAGTTAGCCACTACGACAGCAAAGTTGCTCCAATCA
GATCGCCAATTTCATTCCGCAGACTTTCGCGTCGAAACCGCTTATTTGGGAGCTGGGTACGGCAGGGTTGGAGACTTAGA
GCGATCGGCGATTAACCTCCTGGCGCAATCAGAAGGCATTCTTGTCGATCCAGTTTATTCGGGTCGGGCGATGGGTGGGT
TATTAGATTTAATCCGAAAGGGGCAATTTAATCCCCAACAAACCGTTCTGTTTTGGCATACGGGAGGACAACCTGCCCTC
TTTGCACCACAATTTTCCTTGCAAGAGACAAGCTAG

Upstream 100 bases:

>100_bases
TTTACCCTAAAAAAGGCTAGATTGCGGGGATTTTTGATGGCAATATCCCTCTCATCTCCTACATTTTTAGAATCCGGGTA
TAGCTGATCTCTTTTTACAT

Downstream 100 bases:

>100_bases
TATTCCGTCAAAGATTTATTGATGGGTAAAGTCTGTGTAATTTGACCCTGGCATCTTGCGTCGTGAACCGCCAGTCAATC
CATGTTCCCTTTTGGTTTCG

Product: D-cysteine desulfhydrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MPFHHLPRRSLGFFPTPIVELPRLSQVLDGPRILMKRDDQTGLALGGNKTRKLEFLIAEALHQHCDCVLTAGASQSNHCR
QTAAAAAMVGLDCHLVLGGTPPDRANGNLLLDELLGAQIHWTGTNRKGEQLSAIASQLQAQGRHPYVIPYGGSNALGAVG
FVAAMAELQQQLQAMSVSVDAIVFASSSGGTQAGLTVGKSLLAIDVELIGIRIDKAEDQQLSYQDQLAELATTTAKLLQS
DRQFHSADFRVETAYLGAGYGRVGDLERSAINLLAQSEGILVDPVYSGRAMGGLLDLIRKGQFNPQQTVLFWHTGGQPAL
FAPQFSLQETS

Sequences:

>Translated_331_residues
MPFHHLPRRSLGFFPTPIVELPRLSQVLDGPRILMKRDDQTGLALGGNKTRKLEFLIAEALHQHCDCVLTAGASQSNHCR
QTAAAAAMVGLDCHLVLGGTPPDRANGNLLLDELLGAQIHWTGTNRKGEQLSAIASQLQAQGRHPYVIPYGGSNALGAVG
FVAAMAELQQQLQAMSVSVDAIVFASSSGGTQAGLTVGKSLLAIDVELIGIRIDKAEDQQLSYQDQLAELATTTAKLLQS
DRQFHSADFRVETAYLGAGYGRVGDLERSAINLLAQSEGILVDPVYSGRAMGGLLDLIRKGQFNPQQTVLFWHTGGQPAL
FAPQFSLQETS
>Mature_330_residues
PFHHLPRRSLGFFPTPIVELPRLSQVLDGPRILMKRDDQTGLALGGNKTRKLEFLIAEALHQHCDCVLTAGASQSNHCRQ
TAAAAAMVGLDCHLVLGGTPPDRANGNLLLDELLGAQIHWTGTNRKGEQLSAIASQLQAQGRHPYVIPYGGSNALGAVGF
VAAMAELQQQLQAMSVSVDAIVFASSSGGTQAGLTVGKSLLAIDVELIGIRIDKAEDQQLSYQDQLAELATTTAKLLQSD
RQFHSADFRVETAYLGAGYGRVGDLERSAINLLAQSEGILVDPVYSGRAMGGLLDLIRKGQFNPQQTVLFWHTGGQPALF
APQFSLQETS

Specific function: Catalyzes the alpha,beta-elimination reaction of D- cysteine and of several D-cysteine derivatives. It could be a defense mechanism against D-cysteine [H]

COG id: COG2515

COG function: function code E; 1-aminocyclopropane-1-carboxylate deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ACC deaminase/D-cysteine desulfhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082000, Length=331, Percent_Identity=44.7129909365559, Blast_Score=242, Evalue=2e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005966
- InterPro:   IPR001926 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.4.1.15 [H]

Molecular weight: Translated: 35461; Mature: 35330

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFHHLPRRSLGFFPTPIVELPRLSQVLDGPRILMKRDDQTGLALGGNKTRKLEFLIAEA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEECCCCCHHHHHHHHHH
LHQHCDCVLTAGASQSNHCRQTAAAAAMVGLDCHLVLGGTPPDRANGNLLLDELLGAQIH
HHHHCCEEEECCCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEHHHHCCEEE
WTGTNRKGEQLSAIASQLQAQGRHPYVIPYGGSNALGAVGFVAAMAELQQQLQAMSVSVD
EECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEEE
AIVFASSSGGTQAGLTVGKSLLAIDVELIGIRIDKAEDQQLSYQDQLAELATTTAKLLQS
EEEEECCCCCCHHHHHHCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
DRQFHSADFRVETAYLGAGYGRVGDLERSAINLLAQSEGILVDPVYSGRAMGGLLDLIRK
HHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHC
GQFNPQQTVLFWHTGGQPALFAPQFSLQETS
CCCCCCEEEEEEECCCCCCEECCCCCCCCCC
>Mature Secondary Structure 
PFHHLPRRSLGFFPTPIVELPRLSQVLDGPRILMKRDDQTGLALGGNKTRKLEFLIAEA
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEECCCCCHHHHHHHHHH
LHQHCDCVLTAGASQSNHCRQTAAAAAMVGLDCHLVLGGTPPDRANGNLLLDELLGAQIH
HHHHCCEEEECCCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEHHHHCCEEE
WTGTNRKGEQLSAIASQLQAQGRHPYVIPYGGSNALGAVGFVAAMAELQQQLQAMSVSVD
EECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEEE
AIVFASSSGGTQAGLTVGKSLLAIDVELIGIRIDKAEDQQLSYQDQLAELATTTAKLLQS
EEEEECCCCCCHHHHHHCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
DRQFHSADFRVETAYLGAGYGRVGDLERSAINLLAQSEGILVDPVYSGRAMGGLLDLIRK
HHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHC
GQFNPQQTVLFWHTGGQPALFAPQFSLQETS
CCCCCCEEEEEEECCCCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA