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The map label for this gene is hli [H]

Identifier: 158334543

GI number: 158334543

Start: 1346376

End: 1347425

Strand: Reverse

Name: hli [H]

Synonym: AM1_1369

Alternate gene names: 158334543

Gene position: 1347425-1346376 (Counterclockwise)

Preceding gene: 158334546

Following gene: 158334542

Centisome position: 20.72

GC content: 46.0

Gene sequence:

>1050_bases
ATGCAAACTTATGGACAAACCGACGTTGAGTACGGCTGGTGGTCTGGAAACTCCCGCTTTTCTGACTACAGCGGCCAGTT
CTTAGCTGCCCATAACGGCCAAATTGCCTCCATGTGCTTTTGGGCCGGTTCTTTTACCCTATTTGAAGTATCCCGTTTTA
ACCCCGACTTACCCGTTTATCAACAAAATTTAGTTTGTATTCCCCAGCTAGCTCGTGCCGGATGGGGGGTTGCAGCTGGT
GGTGCTGTTGTTGATACCTACCCCTATTTTGCGATCGCAATGATTCACCTTGTTGCTGCTGCAATTTTAGGTGCTGGTGC
TCTCTATGGCGTTACCAAAGGCCCTAAGGTCCTTGCTGATAGCGAATTTTCTGGCGCTCAAAGATTTCATTTCGAGTGGG
ATGATTTTGAAACTCAAGGTCGTATCCTTGGGCATCACCTTCTGTTCTTAGGTGCTGCTTGCTTGTTATTCGCAACTTGG
GCTTGTACTCATGGCGTTTACGATCCAGTAGCTGGTGAAGTCCGGGCCATCTCTCCTAGTCTGAACTTAGTTAGATTTTT
TAAGTACGGCTGGGCTACTCCTGGATTCAATCCTTACTTTGTCAACAATCTAGAAGATGTAATTGGTGGACATTTCTTTG
TTTCCTCCCTCTATATCGCTGGTGGTATTTGGCATATTCTTGTAAAGCCTTGGCCTTACACCGATAAGATTTTTGTAAAA
TCTGGTGAAGCTCTACTAGCCTATGCTCTTGCTGGACTAGCTTTTGCAGGATTTAATGCAGCCTATTTCTGCTCCGTCAA
CGACGTTGTATTTCCCGTTGAGCTTTTTGGTCCAGTACTAGAAGCCAAGCTAAACGTTACTCCCTATTTTGCAGAAACCT
TAGATGCATCTGATGGTGGTCACACCACACGTTTTTGGATCTCTAACTTCCATTACTATTGGGCTTTCTATTGTCTTCAG
GGGCATCTCTTCCATGCGTTGCGTTCTTATGGATTTGACTTCCGTCGTATCCCCCGTGCCCTGGCTAGCCTAACTCCTCA
GGCAAACTAA

Upstream 100 bases:

>100_bases
ACCACAGACAGCAAGAGGCGAGGTCTGATAGTATTTTTGATATTAAGTTTGATAATAAAGTTACGGTGGCACCGATAACA
GAGGAGGAAATTATTTAACA

Downstream 100 bases:

>100_bases
GTTGATCTGCTAGTAGGCGTTAACTTTTCGTTTGTCTCGGCTTTAGGGTGACAGCTCATGGACTGAGATGATAGTCCAAT
CCGCTGTCACCCTAAATGTT

Product: high light inducible protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MQTYGQTDVEYGWWSGNSRFSDYSGQFLAAHNGQIASMCFWAGSFTLFEVSRFNPDLPVYQQNLVCIPQLARAGWGVAAG
GAVVDTYPYFAIAMIHLVAAAILGAGALYGVTKGPKVLADSEFSGAQRFHFEWDDFETQGRILGHHLLFLGAACLLFATW
ACTHGVYDPVAGEVRAISPSLNLVRFFKYGWATPGFNPYFVNNLEDVIGGHFFVSSLYIAGGIWHILVKPWPYTDKIFVK
SGEALLAYALAGLAFAGFNAAYFCSVNDVVFPVELFGPVLEAKLNVTPYFAETLDASDGGHTTRFWISNFHYYWAFYCLQ
GHLFHALRSYGFDFRRIPRALASLTPQAN

Sequences:

>Translated_349_residues
MQTYGQTDVEYGWWSGNSRFSDYSGQFLAAHNGQIASMCFWAGSFTLFEVSRFNPDLPVYQQNLVCIPQLARAGWGVAAG
GAVVDTYPYFAIAMIHLVAAAILGAGALYGVTKGPKVLADSEFSGAQRFHFEWDDFETQGRILGHHLLFLGAACLLFATW
ACTHGVYDPVAGEVRAISPSLNLVRFFKYGWATPGFNPYFVNNLEDVIGGHFFVSSLYIAGGIWHILVKPWPYTDKIFVK
SGEALLAYALAGLAFAGFNAAYFCSVNDVVFPVELFGPVLEAKLNVTPYFAETLDASDGGHTTRFWISNFHYYWAFYCLQ
GHLFHALRSYGFDFRRIPRALASLTPQAN
>Mature_349_residues
MQTYGQTDVEYGWWSGNSRFSDYSGQFLAAHNGQIASMCFWAGSFTLFEVSRFNPDLPVYQQNLVCIPQLARAGWGVAAG
GAVVDTYPYFAIAMIHLVAAAILGAGALYGVTKGPKVLADSEFSGAQRFHFEWDDFETQGRILGHHLLFLGAACLLFATW
ACTHGVYDPVAGEVRAISPSLNLVRFFKYGWATPGFNPYFVNNLEDVIGGHFFVSSLYIAGGIWHILVKPWPYTDKIFVK
SGEALLAYALAGLAFAGFNAAYFCSVNDVVFPVELFGPVLEAKLNVTPYFAETLDASDGGHTTRFWISNFHYYWAFYCLQ
GHLFHALRSYGFDFRRIPRALASLTPQAN

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystems II and I. The Prochlorales pcb genes are not related to the higher plant LHCs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 38677; Mature: 38677

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTYGQTDVEYGWWSGNSRFSDYSGQFLAAHNGQIASMCFWAGSFTLFEVSRFNPDLPVY
CCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCEEEEEEECCCEEEEEEECCCCCCCCC
QQNLVCIPQLARAGWGVAAGGAVVDTYPYFAIAMIHLVAAAILGAGALYGVTKGPKVLAD
CCCCEEHHHHHHCCCCEECCCCEEECHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCEEEC
SEFSGAQRFHFEWDDFETQGRILGHHLLFLGAACLLFATWACTHGVYDPVAGEVRAISPS
CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCC
LNLVRFFKYGWATPGFNPYFVNNLEDVIGGHFFVSSLYIAGGIWHILVKPWPYTDKIFVK
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEE
SGEALLAYALAGLAFAGFNAAYFCSVNDVVFPVELFGPVLEAKLNVTPYFAETLDASDGG
CCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHHHHHHCCCCCHHHHHCCCCCCC
HTTRFWISNFHYYWAFYCLQGHLFHALRSYGFDFRRIPRALASLTPQAN
CEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQTYGQTDVEYGWWSGNSRFSDYSGQFLAAHNGQIASMCFWAGSFTLFEVSRFNPDLPVY
CCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCEEEEEEECCCEEEEEEECCCCCCCCC
QQNLVCIPQLARAGWGVAAGGAVVDTYPYFAIAMIHLVAAAILGAGALYGVTKGPKVLAD
CCCCEEHHHHHHCCCCEECCCCEEECHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCEEEC
SEFSGAQRFHFEWDDFETQGRILGHHLLFLGAACLLFATWACTHGVYDPVAGEVRAISPS
CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCC
LNLVRFFKYGWATPGFNPYFVNNLEDVIGGHFFVSSLYIAGGIWHILVKPWPYTDKIFVK
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEE
SGEALLAYALAGLAFAGFNAAYFCSVNDVVFPVELFGPVLEAKLNVTPYFAETLDASDGG
CCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHHHHHHCCCCCHHHHHCCCCCCC
HTTRFWISNFHYYWAFYCLQGHLFHALRSYGFDFRRIPRALASLTPQAN
CEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8986795; 9526503 [H]