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The map label for this gene is hli [H]

Identifier: 158334542

GI number: 158334542

Start: 1345046

End: 1346107

Strand: Reverse

Name: hli [H]

Synonym: AM1_1368

Alternate gene names: 158334542

Gene position: 1346107-1345046 (Counterclockwise)

Preceding gene: 158334543

Following gene: 158334540

Centisome position: 20.7

GC content: 51.88

Gene sequence:

>1062_bases
GTGACCGCATCTGTACGAGGAAGAAGAGGCGGCAAGGTAGCCGTCCAAACTGATTTACCGACATCCGTATTAAGCAACTT
TGAGAACGAATGGTGGGCCGGCAACGTTCGGATGACCGACCTATCCGGTATGCTTCTGGGTGCTCACCTATGCCATGCCG
CCTTAATGAGCGTCGTTCCAGGCGCGTTTATTGTTCAAGAAGTAGCCCGTTATCAGCCGGGAGTCTCCCTGCCAGATCAA
GGGATGATCTTCATGCCCCACCTAGCCGCTCTTGGTGTTGGTGTAGGTGCTGGAGGTGAGATCGTCGACACCTACCCCTT
CTTCGTAATTGGGGTTCTTCACTTTTTCATCGCAGCCGTATGTTGTGCAGCCGGTTTATTCCACACTTTCCGTGGTGAAA
CTGACCTGAACGATGCTCCTGATGACAGTTATGCAGCCGCCTTCCGGTATGAGTGGGATGACTTTGAGAGCCTATCCACC
ATTGTGGGTCACCACCTCGTCTTCATCAGCGTGGCCTGTTTGATCTTTGCCGTCAACGCCACCTATGGCACCGGCATGTA
TGACATCAACACAGACACCGTGCATCAAATCAGCCCTAACTTGAATCCAATTACCTTGATTGGTTACCTCTTTGGATTCA
CCCCTGACGGCTGGAGTGGTGCAGGTATGGCAGCCGTTAACAACATGGAAGACGTGATTGGCGGTCACTTCCTCATTGGT
GTGATTGACCTATTAGGCGCAGCATTCCATATTCTCTATCGCAAGCCTACCCCATTGTTTACCAAGCATCCCGTCTTTTC
ACCTGCCAACGGTGGCTGGTCCAACGTCGGTATGCTCAATAGCGAACTCATCCTATCTTGGAGTGTTGCTTCCGTAGGCT
TCATGGGAATCAGCTCCTCCCTATTCATTCGCTACTGTGACGTCGCCTATCCTCCTGTATTCCATGGCGTAGATCGGACA
GGTGCTGCAACCTTGCAGCTCATCCTGGGTCTAGTCTGGATGTTAGGCGGTGGTCTTTGGCATGGTCTTCGTGGAGAGAG
ACTCTACGCAGCCAATAAATAA

Upstream 100 bases:

>100_bases
TTACTACACATATCTGTTGTATCCACGGGCAATCCTAACTGTCCTGGAGAACACCTAAACTAATTCTTAAACCTTTAACT
AAGACAAGAGGAAAACAGTT

Downstream 100 bases:

>100_bases
AGCCCCCTGACGCACTGGTCAAAGTACCAACAGACCATAAGGTCAGTCATCAAGGGCAAGCAGGATATCCTGCTTGCCCT
TTTGCATGAAGAGGCTTTAT

Product: high light inducible protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MTASVRGRRGGKVAVQTDLPTSVLSNFENEWWAGNVRMTDLSGMLLGAHLCHAALMSVVPGAFIVQEVARYQPGVSLPDQ
GMIFMPHLAALGVGVGAGGEIVDTYPFFVIGVLHFFIAAVCCAAGLFHTFRGETDLNDAPDDSYAAAFRYEWDDFESLST
IVGHHLVFISVACLIFAVNATYGTGMYDINTDTVHQISPNLNPITLIGYLFGFTPDGWSGAGMAAVNNMEDVIGGHFLIG
VIDLLGAAFHILYRKPTPLFTKHPVFSPANGGWSNVGMLNSELILSWSVASVGFMGISSSLFIRYCDVAYPPVFHGVDRT
GAATLQLILGLVWMLGGGLWHGLRGERLYAANK

Sequences:

>Translated_353_residues
MTASVRGRRGGKVAVQTDLPTSVLSNFENEWWAGNVRMTDLSGMLLGAHLCHAALMSVVPGAFIVQEVARYQPGVSLPDQ
GMIFMPHLAALGVGVGAGGEIVDTYPFFVIGVLHFFIAAVCCAAGLFHTFRGETDLNDAPDDSYAAAFRYEWDDFESLST
IVGHHLVFISVACLIFAVNATYGTGMYDINTDTVHQISPNLNPITLIGYLFGFTPDGWSGAGMAAVNNMEDVIGGHFLIG
VIDLLGAAFHILYRKPTPLFTKHPVFSPANGGWSNVGMLNSELILSWSVASVGFMGISSSLFIRYCDVAYPPVFHGVDRT
GAATLQLILGLVWMLGGGLWHGLRGERLYAANK
>Mature_352_residues
TASVRGRRGGKVAVQTDLPTSVLSNFENEWWAGNVRMTDLSGMLLGAHLCHAALMSVVPGAFIVQEVARYQPGVSLPDQG
MIFMPHLAALGVGVGAGGEIVDTYPFFVIGVLHFFIAAVCCAAGLFHTFRGETDLNDAPDDSYAAAFRYEWDDFESLSTI
VGHHLVFISVACLIFAVNATYGTGMYDINTDTVHQISPNLNPITLIGYLFGFTPDGWSGAGMAAVNNMEDVIGGHFLIGV
IDLLGAAFHILYRKPTPLFTKHPVFSPANGGWSNVGMLNSELILSWSVASVGFMGISSSLFIRYCDVAYPPVFHGVDRTG
AATLQLILGLVWMLGGGLWHGLRGERLYAANK

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystems II and I. The Prochlorales pcb genes are not related to the higher plant LHCs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 37939; Mature: 37808

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASVRGRRGGKVAVQTDLPTSVLSNFENEWWAGNVRMTDLSGMLLGAHLCHAALMSVVP
CCCCCCCCCCCEEEEECCCCHHHHHCCCCCCEECCEEEECHHHHHHHHHHHHHHHHHHCC
GAFIVQEVARYQPGVSLPDQGMIFMPHLAALGVGVGAGGEIVDTYPFFVIGVLHFFIAAV
HHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHH
CCAAGLFHTFRGETDLNDAPDDSYAAAFRYEWDDFESLSTIVGHHLVFISVACLIFAVNA
HHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
TYGTGMYDINTDTVHQISPNLNPITLIGYLFGFTPDGWSGAGMAAVNNMEDVIGGHFLIG
CCCCCEEECCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHH
VIDLLGAAFHILYRKPTPLFTKHPVFSPANGGWSNVGMLNSELILSWSVASVGFMGISSS
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCHH
LFIRYCDVAYPPVFHGVDRTGAATLQLILGLVWMLGGGLWHGLRGERLYAANK
HHHEECCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCEEECCCC
>Mature Secondary Structure 
TASVRGRRGGKVAVQTDLPTSVLSNFENEWWAGNVRMTDLSGMLLGAHLCHAALMSVVP
CCCCCCCCCCEEEEECCCCHHHHHCCCCCCEECCEEEECHHHHHHHHHHHHHHHHHHCC
GAFIVQEVARYQPGVSLPDQGMIFMPHLAALGVGVGAGGEIVDTYPFFVIGVLHFFIAAV
HHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHH
CCAAGLFHTFRGETDLNDAPDDSYAAAFRYEWDDFESLSTIVGHHLVFISVACLIFAVNA
HHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
TYGTGMYDINTDTVHQISPNLNPITLIGYLFGFTPDGWSGAGMAAVNNMEDVIGGHFLIG
CCCCCEEECCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHH
VIDLLGAAFHILYRKPTPLFTKHPVFSPANGGWSNVGMLNSELILSWSVASVGFMGISSS
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCHH
LFIRYCDVAYPPVFHGVDRTGAATLQLILGLVWMLGGGLWHGLRGERLYAANK
HHHEECCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8986795; 9526503 [H]