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The map label for this gene is hli [H]

Identifier: 158334458

GI number: 158334458

Start: 1271888

End: 1272958

Strand: Reverse

Name: hli [H]

Synonym: AM1_1279

Alternate gene names: 158334458

Gene position: 1272958-1271888 (Counterclockwise)

Preceding gene: 158334462

Following gene: 158334456

Centisome position: 19.57

GC content: 45.19

Gene sequence:

>1071_bases
ATGGCAACAAAAGTCGATACTGCTCCTGAATATCCCTGGTATTCGGGCAATAGCCGCCTCGAAGATCCTGCGGTTCAAGG
CAAATGGTTGGCTGCTCATATTGCTCAGATTGCACTAATTGTTTTCTGGGTTGGGCTCAACACTTTTTCTGAGAACCAAG
CCTTTGATACAAGCCTCCCAATGTTTGACCAAGGATTAGTTCTAATCCCTCACTTGGCTGCTTTGGGTTTTGGTGTTGGT
TCAGGTGGTGTTGTCACTAATACCTTCGTTTTTACCCAAATCGGTGCCATTCATATGGTGTCCAGCTTCGTTCTGTTTGG
AGGTGCATACTTCCATGCGAAAATTGGCCCTTCTGTATTGGCTGATGGCGGACGTGGCAATACTGACCAATTTGCGTTCT
CTTGGGATGATCCTAAGAAACTCGGTTATATCCTTGGTCATCACCTCGTGTTGATTGGTACGGGTGCTTTGCTATTCGTT
CTGTGGATCAAGTTCCACGGTATCTATGACCCCACGATTGGTGAAGTTCGTACCGTTGCTGCACCTGGATCTACAATCGG
CGATGTGGTTCTAAAGTATGGCTGGTTTACACCTGGCTATAACTGCTTCTTTGTCGATAACTTAGAAGACTTAGCTTCTG
GACATTTGTTTATTGGTTTAGTCGACATTGCTGGTGGTATTTTCCATATCAATGTTGCTCCTTTGCCCTGGTCCAAGGTC
GTCAACAAGTATACTTACTCTCCTGATGGTCTCTTAGGTACTGCCATTGGTGGCCTCGCCCTCATGGGATTCATCTCCGC
TTATTTCTGTGCAGTGAATACTCTTGTTTATCCTGTAGAGTTCTTTGGTCCTGCACTGGAAGTGAAGTTCGGTATTGCTC
CTTACTTTAAGGACACAGCTGATCTCGCAGATGGTTTCTACACATCCCGTGCTTGGTTGGCAAATATTACTTACTACCTA
GCTTTCTATATGTTGCAAGGTCACCTCTATCACACCTTAAAAGCAATGGGCTTCAAGTTTGAAGATATCCCTGCTGTTAT
TGCTCGTGATACAGGTAATGCTCCTGCATAA

Upstream 100 bases:

>100_bases
CTGTTTAAGATACTTGCATTTTCCTGTGACATAAATTTTATCAGGCGAAATTTTATAGAGTCGTTTTTCCTCAAAACATT
ATCCTTTTGGAATAAAGAAA

Downstream 100 bases:

>100_bases
ACCTTCACCACTTTTCTAAAAATTTATAATCTGCTAGTTCCTAGAACTAGCAGATTTTTTTGTAGGTAACCCTGCTTTTA
GAGCTTTAAAGTGGATGCCA

Product: high light inducible protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MATKVDTAPEYPWYSGNSRLEDPAVQGKWLAAHIAQIALIVFWVGLNTFSENQAFDTSLPMFDQGLVLIPHLAALGFGVG
SGGVVTNTFVFTQIGAIHMVSSFVLFGGAYFHAKIGPSVLADGGRGNTDQFAFSWDDPKKLGYILGHHLVLIGTGALLFV
LWIKFHGIYDPTIGEVRTVAAPGSTIGDVVLKYGWFTPGYNCFFVDNLEDLASGHLFIGLVDIAGGIFHINVAPLPWSKV
VNKYTYSPDGLLGTAIGGLALMGFISAYFCAVNTLVYPVEFFGPALEVKFGIAPYFKDTADLADGFYTSRAWLANITYYL
AFYMLQGHLYHTLKAMGFKFEDIPAVIARDTGNAPA

Sequences:

>Translated_356_residues
MATKVDTAPEYPWYSGNSRLEDPAVQGKWLAAHIAQIALIVFWVGLNTFSENQAFDTSLPMFDQGLVLIPHLAALGFGVG
SGGVVTNTFVFTQIGAIHMVSSFVLFGGAYFHAKIGPSVLADGGRGNTDQFAFSWDDPKKLGYILGHHLVLIGTGALLFV
LWIKFHGIYDPTIGEVRTVAAPGSTIGDVVLKYGWFTPGYNCFFVDNLEDLASGHLFIGLVDIAGGIFHINVAPLPWSKV
VNKYTYSPDGLLGTAIGGLALMGFISAYFCAVNTLVYPVEFFGPALEVKFGIAPYFKDTADLADGFYTSRAWLANITYYL
AFYMLQGHLYHTLKAMGFKFEDIPAVIARDTGNAPA
>Mature_355_residues
ATKVDTAPEYPWYSGNSRLEDPAVQGKWLAAHIAQIALIVFWVGLNTFSENQAFDTSLPMFDQGLVLIPHLAALGFGVGS
GGVVTNTFVFTQIGAIHMVSSFVLFGGAYFHAKIGPSVLADGGRGNTDQFAFSWDDPKKLGYILGHHLVLIGTGALLFVL
WIKFHGIYDPTIGEVRTVAAPGSTIGDVVLKYGWFTPGYNCFFVDNLEDLASGHLFIGLVDIAGGIFHINVAPLPWSKVV
NKYTYSPDGLLGTAIGGLALMGFISAYFCAVNTLVYPVEFFGPALEVKFGIAPYFKDTADLADGFYTSRAWLANITYYLA
FYMLQGHLYHTLKAMGFKFEDIPAVIARDTGNAPA

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystems II and I. The Prochlorales pcb genes are not related to the higher plant LHCs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 38584; Mature: 38453

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKVDTAPEYPWYSGNSRLEDPAVQGKWLAAHIAQIALIVFWVGLNTFSENQAFDTSLP
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
MFDQGLVLIPHLAALGFGVGSGGVVTNTFVFTQIGAIHMVSSFVLFGGAYFHAKIGPSVL
CCCCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHE
ADGGRGNTDQFAFSWDDPKKLGYILGHHLVLIGTGALLFVLWIKFHGIYDPTIGEVRTVA
ECCCCCCCCCEEEECCCHHHHHHHHHCEEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEE
APGSTIGDVVLKYGWFTPGYNCFFVDNLEDLASGHLFIGLVDIAGGIFHINVAPLPWSKV
CCCCHHHHHHHHHCCCCCCCCEEEECCHHHHHCCCEEEEEEHHCCCEEEEEECCCCHHHH
VNKYTYSPDGLLGTAIGGLALMGFISAYFCAVNTLVYPVEFFGPALEVKFGIAPYFKDTA
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHH
DLADGFYTSRAWLANITYYLAFYMLQGHLYHTLKAMGFKFEDIPAVIARDTGNAPA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure 
ATKVDTAPEYPWYSGNSRLEDPAVQGKWLAAHIAQIALIVFWVGLNTFSENQAFDTSLP
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
MFDQGLVLIPHLAALGFGVGSGGVVTNTFVFTQIGAIHMVSSFVLFGGAYFHAKIGPSVL
CCCCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHE
ADGGRGNTDQFAFSWDDPKKLGYILGHHLVLIGTGALLFVLWIKFHGIYDPTIGEVRTVA
ECCCCCCCCCEEEECCCHHHHHHHHHCEEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEE
APGSTIGDVVLKYGWFTPGYNCFFVDNLEDLASGHLFIGLVDIAGGIFHINVAPLPWSKV
CCCCHHHHHHHHHCCCCCCCCEEEECCHHHHHCCCEEEEEEHHCCCEEEEEECCCCHHHH
VNKYTYSPDGLLGTAIGGLALMGFISAYFCAVNTLVYPVEFFGPALEVKFGIAPYFKDTA
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHH
DLADGFYTSRAWLANITYYLAFYMLQGHLYHTLKAMGFKFEDIPAVIARDTGNAPA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8986795; 9526503 [H]