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The map label for this gene is yjdC [C]

Identifier: 158334408

GI number: 158334408

Start: 1207834

End: 1208415

Strand: Reverse

Name: yjdC [C]

Synonym: AM1_1229

Alternate gene names: 158334408

Gene position: 1208415-1207834 (Counterclockwise)

Preceding gene: 158334409

Following gene: 158334407

Centisome position: 18.58

GC content: 46.91

Gene sequence:

>582_bases
ATGTCCGTGTCAAAAACACCTCGGAAACCTGTTCGTGAACGTATTCTAGAGACTGCTTGCGAACTGTTTTACCGTGAGGG
TATTCAGAATGTTGGCATCGACCGGATTATTGCTGAATCTGGTGTGGCGAAAATGTCTCTCTACAACCATTTCAAGTCCA
AAGATGCCTTAATCGAAGCATTTCTGCGTCAGCGAGATCAGCAATGGCGAGAATGGTTTGTCACTCGCGTTGAAGAACGC
AGTGATGACCCCAAACAGCGACTTTTGAGCTTGTTTGATGTTTTGCAAGAATGGTTTGAAAACCCTAATTTCCGGGGCTG
TGCTTTTATTAATGCCACAGTTGAACTAGCCAATCCCCATCATCCTGGTTGCCAAGCGGCTTTAGACCATCAACTCGCGG
TCTATCAATATATTTTTGATTTAGTGAAGGCAGAAGGCCTGGAACCCGCCGAATCTTTTGCTCGGCAGCTGTTGTTGCTC
GTCCAAGGTGCCATCGTGATTGCCATGATGCAAGATCGTCCCCAAGCAGCCGCTGAAGCTAAAAGTGCAGCGACTCTATT
GCTGAATAGTGATGGGAGCTAA

Upstream 100 bases:

>100_bases
CTCAGTAATTCATGAGAAAAACTTTCTTTCTAAGAACCCACAAACGCTGTTCTTTGAACCAAATGATAAGCTGAAGCCGA
CTACACTTTCCTACTCATCT

Downstream 100 bases:

>100_bases
TTGATATTTCAAGTCATCCGTCAAGGTGATTCATGAGTTAGTGGTAAAGAAGCAAGATTTGTATTTATTGATAAGACTAG
AAAAAATCAGCCTAGAATTT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; TetR Family Regulatory Protein; Regulatory Protein; Transcriptional Regulator Protein; TetR-Family Transcriptional Regulator; Methionine And Cysteine Biosynthesis Regulator; Transcriptional Regulator Tetr Family; Transcription Regulator Protein; TetR-Type Transcriptional Regulator Of Sulfur Metabolism; Tetr Family Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator; Transcription Regulator; Transcriptional Regulator Tetr-Like Protein; TetR-Family Protein Transcriptional Regulator; Transcriptional Repressor

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSVSKTPRKPVRERILETACELFYREGIQNVGIDRIIAESGVAKMSLYNHFKSKDALIEAFLRQRDQQWREWFVTRVEER
SDDPKQRLLSLFDVLQEWFENPNFRGCAFINATVELANPHHPGCQAALDHQLAVYQYIFDLVKAEGLEPAESFARQLLLL
VQGAIVIAMMQDRPQAAAEAKSAATLLLNSDGS

Sequences:

>Translated_193_residues
MSVSKTPRKPVRERILETACELFYREGIQNVGIDRIIAESGVAKMSLYNHFKSKDALIEAFLRQRDQQWREWFVTRVEER
SDDPKQRLLSLFDVLQEWFENPNFRGCAFINATVELANPHHPGCQAALDHQLAVYQYIFDLVKAEGLEPAESFARQLLLL
VQGAIVIAMMQDRPQAAAEAKSAATLLLNSDGS
>Mature_192_residues
SVSKTPRKPVRERILETACELFYREGIQNVGIDRIIAESGVAKMSLYNHFKSKDALIEAFLRQRDQQWREWFVTRVEERS
DDPKQRLLSLFDVLQEWFENPNFRGCAFINATVELANPHHPGCQAALDHQLAVYQYIFDLVKAEGLEPAESFARQLLLLV
QGAIVIAMMQDRPQAAAEAKSAATLLLNSDGS

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082374, Length=165, Percent_Identity=26.0606060606061, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21935; Mature: 21804

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVSKTPRKPVRERILETACELFYREGIQNVGIDRIIAESGVAKMSLYNHFKSKDALIEA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHH
FLRQRDQQWREWFVTRVEERSDDPKQRLLSLFDVLQEWFENPNFRGCAFINATVELANPH
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCC
HPGCQAALDHQLAVYQYIFDLVKAEGLEPAESFARQLLLLVQGAIVIAMMQDRPQAAAEA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
KSAATLLLNSDGS
HHHHEEEEECCCC
>Mature Secondary Structure 
SVSKTPRKPVRERILETACELFYREGIQNVGIDRIIAESGVAKMSLYNHFKSKDALIEA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHH
FLRQRDQQWREWFVTRVEERSDDPKQRLLSLFDVLQEWFENPNFRGCAFINATVELANPH
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCC
HPGCQAALDHQLAVYQYIFDLVKAEGLEPAESFARQLLLLVQGAIVIAMMQDRPQAAAEA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
KSAATLLLNSDGS
HHHHEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA