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The map label for this gene is hli [H]

Identifier: 158334316

GI number: 158334316

Start: 1107467

End: 1108570

Strand: Direct

Name: hli [H]

Synonym: AM1_1135

Alternate gene names: 158334316

Gene position: 1107467-1108570 (Clockwise)

Preceding gene: 158334315

Following gene: 158334317

Centisome position: 17.03

GC content: 48.01

Gene sequence:

>1104_bases
ATGGAATCCTCGATTGAAAACCAAAACTATCCCTGGTATGCAGGGAATAGCCGCTTAATTGAACCCTCTGTTTCAGGGAG
ATGGTTAGCTGCCCATATTCTCCAAGCGGCCATTATTATGTTCTGGGTGGGGCTCAATACCCTATCGGAGTTACAGGTCT
TTGACCCCGATGTTGCTATGTATGAGCAGGGATTAGTGCTGATCCCTCATATGGCAGCTGAAGGGATAGGCGTCGGTCCA
GGGGGAGTAGTTATGGATACATTCCCCTACTTTGCCATTGCCTTTGTACATTGGGTCGCGAGTTTAGTTCTCCTGTTTGG
CGGTTATTATCATCTCGCCGTGGGGCCGTCTGATCTTTCCAAGGGAGGCCGAGGAAATACGAAACGGTTTGCCTTTGACT
GGGATGATCCGAAACAGTTGGGATATATCTTAGGTAACCACCTCCTCTTTATTGGATTTGCCTCAATCCTATTTGCAGGC
TGGATTATCAGTCATGGTATCTATGACCCCACCATTGGGGAGGTTCATGCAGTCACCCCCACTGCTGAGAACTTTACCCA
TATCTATCAATATGGTTGGTCAACGCCTGGATTTAATCCGTTTTTTATCGATAATTTAGGGGATTTAGCCGCAGGTCATA
TTTTAATTGGCCTCTTCGACATGCTCGGCGGAATTTGGCACATTAATGTCGCCCCCTTCAGTTGGGAACAGCAGCTAGGC
GCTCGAAGAGATAACTATAGTGCCGATGGGCTGATTGGCTTATCCCTGGGAGGCGTTGCCATCATGGGATTCATTTCCGC
CTATTTTTGTGCAGTCAATACCTTTGTCTATCCGGTTGAGTTTTACGGTGCTGCGTTGGAAGTGAAATTTAACGTTGCCC
CTTACTTCAAGGACTCAGTTGAGCTAGGAGATGGTGTGTTTAGCTCCCGAGCTTGGCTATCCAATGTGACTTACTATGTC
GGCTTCTACTGCTTGCAAGGCCATCTTTTCCATAGCCTCAGAGCCATGGGCGTCAAGTTTGAAAATCTTCCTCAAGCCCT
TGGTGCAGCTTTCAAAATTGAATCTTCCCAACCCACAGAAGCCGCGCAGCCCACTGGCGAATAG

Upstream 100 bases:

>100_bases
AAGAGTCACAAATCGCTCTTGTCCCGTACTGATACAGCGCAGCGATATTCAAAACCCCCGTTTTGTCCTTTTTCTTTTAT
TTATATATTGGAACACCATT

Downstream 100 bases:

>100_bases
CATTTTCAGGGATTGATGGAGCAATCTTTTTCGCAATGAAGTGGCAGGATGGTTATCCGATGGGGACAGCCATCCTGCCT
GCAAGCGGCAAGGCGTGCTT

Product: high light inducible protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MESSIENQNYPWYAGNSRLIEPSVSGRWLAAHILQAAIIMFWVGLNTLSELQVFDPDVAMYEQGLVLIPHMAAEGIGVGP
GGVVMDTFPYFAIAFVHWVASLVLLFGGYYHLAVGPSDLSKGGRGNTKRFAFDWDDPKQLGYILGNHLLFIGFASILFAG
WIISHGIYDPTIGEVHAVTPTAENFTHIYQYGWSTPGFNPFFIDNLGDLAAGHILIGLFDMLGGIWHINVAPFSWEQQLG
ARRDNYSADGLIGLSLGGVAIMGFISAYFCAVNTFVYPVEFYGAALEVKFNVAPYFKDSVELGDGVFSSRAWLSNVTYYV
GFYCLQGHLFHSLRAMGVKFENLPQALGAAFKIESSQPTEAAQPTGE

Sequences:

>Translated_367_residues
MESSIENQNYPWYAGNSRLIEPSVSGRWLAAHILQAAIIMFWVGLNTLSELQVFDPDVAMYEQGLVLIPHMAAEGIGVGP
GGVVMDTFPYFAIAFVHWVASLVLLFGGYYHLAVGPSDLSKGGRGNTKRFAFDWDDPKQLGYILGNHLLFIGFASILFAG
WIISHGIYDPTIGEVHAVTPTAENFTHIYQYGWSTPGFNPFFIDNLGDLAAGHILIGLFDMLGGIWHINVAPFSWEQQLG
ARRDNYSADGLIGLSLGGVAIMGFISAYFCAVNTFVYPVEFYGAALEVKFNVAPYFKDSVELGDGVFSSRAWLSNVTYYV
GFYCLQGHLFHSLRAMGVKFENLPQALGAAFKIESSQPTEAAQPTGE
>Mature_367_residues
MESSIENQNYPWYAGNSRLIEPSVSGRWLAAHILQAAIIMFWVGLNTLSELQVFDPDVAMYEQGLVLIPHMAAEGIGVGP
GGVVMDTFPYFAIAFVHWVASLVLLFGGYYHLAVGPSDLSKGGRGNTKRFAFDWDDPKQLGYILGNHLLFIGFASILFAG
WIISHGIYDPTIGEVHAVTPTAENFTHIYQYGWSTPGFNPFFIDNLGDLAAGHILIGLFDMLGGIWHINVAPFSWEQQLG
ARRDNYSADGLIGLSLGGVAIMGFISAYFCAVNTFVYPVEFYGAALEVKFNVAPYFKDSVELGDGVFSSRAWLSNVTYYV
GFYCLQGHLFHSLRAMGVKFENLPQALGAAFKIESSQPTEAAQPTGE

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystems II and I. The Prochlorales pcb genes are not related to the higher plant LHCs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 40243; Mature: 40243

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESSIENQNYPWYAGNSRLIEPSVSGRWLAAHILQAAIIMFWVGLNTLSELQVFDPDVAM
CCCCCCCCCCCEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCEECCCCHHH
YEQGLVLIPHMAAEGIGVGPGGVVMDTFPYFAIAFVHWVASLVLLFGGYYHLAVGPSDLS
HHCCCEEEECHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHC
KGGRGNTKRFAFDWDDPKQLGYILGNHLLFIGFASILFAGWIISHGIYDPTIGEVHAVTP
CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC
TAENFTHIYQYGWSTPGFNPFFIDNLGDLAAGHILIGLFDMLGGIWHINVAPFSWEQQLG
CHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHC
ARRDNYSADGLIGLSLGGVAIMGFISAYFCAVNTFVYPVEFYGAALEVKFNVAPYFKDSV
CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHEEEHHHCCEEEEEEEEECCCCCCCH
ELGDGVFSSRAWLSNVTYYVGFYCLQGHLFHSLRAMGVKFENLPQALGAAFKIESSQPTE
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCEEEECCCCCCC
AAQPTGE
CCCCCCC
>Mature Secondary Structure
MESSIENQNYPWYAGNSRLIEPSVSGRWLAAHILQAAIIMFWVGLNTLSELQVFDPDVAM
CCCCCCCCCCCEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCEECCCCHHH
YEQGLVLIPHMAAEGIGVGPGGVVMDTFPYFAIAFVHWVASLVLLFGGYYHLAVGPSDLS
HHCCCEEEECHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHC
KGGRGNTKRFAFDWDDPKQLGYILGNHLLFIGFASILFAGWIISHGIYDPTIGEVHAVTP
CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC
TAENFTHIYQYGWSTPGFNPFFIDNLGDLAAGHILIGLFDMLGGIWHINVAPFSWEQQLG
CHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHC
ARRDNYSADGLIGLSLGGVAIMGFISAYFCAVNTFVYPVEFYGAALEVKFNVAPYFKDSV
CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHEEEHHHCCEEEEEEEEECCCCCCCH
ELGDGVFSSRAWLSNVTYYVGFYCLQGHLFHSLRAMGVKFENLPQALGAAFKIESSQPTE
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCEEEECCCCCCC
AAQPTGE
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8986795; 9526503 [H]