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The map label for this gene is yvkB [H]

Identifier: 158334302

GI number: 158334302

Start: 1098267

End: 1098905

Strand: Reverse

Name: yvkB [H]

Synonym: AM1_1121

Alternate gene names: 158334302

Gene position: 1098905-1098267 (Counterclockwise)

Preceding gene: 158334309

Following gene: 158334300

Centisome position: 16.9

GC content: 47.1

Gene sequence:

>639_bases
ATGCAACTTTCCAGCCACTCCACTGCTCCACAAACTGACGTTAACCACCGTATTTTAGAAGCTGCCCAGCGGTTATTTGC
CCGTCAAGGATTTGAAAAAACGACGACACGTCAACTTGCAGAAGCTGCTGAGATTGCTGAGGGCACCCTATTTCGGCATT
TCGAGAACAAAAAAGCCATTTTGGTCGCAGTGGTCACCCAAGGTTGGAGTGAAATGCTAACAGACTTACTCACTCATTTA
AGTGAAATGGGTAGCTATCGATCCATTGCCAAACTGATGCGTGAGCGTATGCTAACGCTTCCCAAACAGGCCGACCTGAT
GCGGGTTTGTTTTATGGAAGCCCAGTTTCATCCTGAACTCAGAGATCGAATTCAAGCTGAAATTATTTCTAAAATGACCA
GCGTGGTGGAAGCCTTTATTCAAACGGGGATTGAGCGAGGAACCTATCGTGACCTCAACCCCCAGGTTGTTGCCCGTGTG
TTTCTAGGGATGTTCATGATCGCTGGATTTAGCCAGGATACGCTGATGGATGAAGACCCTTCTCCAGGGTTTCAGCGAGA
AATGGCCGAGACCTTAGCAGATATATTTTTAAATGGAATTCTGACGCAACCCGCCATACAAAAGCAGCCAGAGATCTGA

Upstream 100 bases:

>100_bases
TATTCAGAAATTACCTTCGTAAAGAAACACCAATGCTTCCGTCGGTTCTACAAAATTCATTGGACAATGTAAGCTAATCA
GTTGCTTCAGGTCTGAAATC

Downstream 100 bases:

>100_bases
GACCCTGACTGCTTGACCGAATCTAGTTGAAGTAACCCCTATGCTTTGGATCTAGAGCGTTAAAGAACACCCAAATAGGT
GAGTCCTAGAATCGCTCCAG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MQLSSHSTAPQTDVNHRILEAAQRLFARQGFEKTTTRQLAEAAEIAEGTLFRHFENKKAILVAVVTQGWSEMLTDLLTHL
SEMGSYRSIAKLMRERMLTLPKQADLMRVCFMEAQFHPELRDRIQAEIISKMTSVVEAFIQTGIERGTYRDLNPQVVARV
FLGMFMIAGFSQDTLMDEDPSPGFQREMAETLADIFLNGILTQPAIQKQPEI

Sequences:

>Translated_212_residues
MQLSSHSTAPQTDVNHRILEAAQRLFARQGFEKTTTRQLAEAAEIAEGTLFRHFENKKAILVAVVTQGWSEMLTDLLTHL
SEMGSYRSIAKLMRERMLTLPKQADLMRVCFMEAQFHPELRDRIQAEIISKMTSVVEAFIQTGIERGTYRDLNPQVVARV
FLGMFMIAGFSQDTLMDEDPSPGFQREMAETLADIFLNGILTQPAIQKQPEI
>Mature_212_residues
MQLSSHSTAPQTDVNHRILEAAQRLFARQGFEKTTTRQLAEAAEIAEGTLFRHFENKKAILVAVVTQGWSEMLTDLLTHL
SEMGSYRSIAKLMRERMLTLPKQADLMRVCFMEAQFHPELRDRIQAEIISKMTSVVEAFIQTGIERGTYRDLNPQVVARV
FLGMFMIAGFSQDTLMDEDPSPGFQREMAETLADIFLNGILTQPAIQKQPEI

Specific function: Potential Regulator Protein For The Acref/Envcd Genes. [C]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24063; Mature: 24063

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLSSHSTAPQTDVNHRILEAAQRLFARQGFEKTTTRQLAEAAEIAEGTLFRHFENKKAI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LVAVVTQGWSEMLTDLLTHLSEMGSYRSIAKLMRERMLTLPKQADLMRVCFMEAQFHPEL
EHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHH
RDRIQAEIISKMTSVVEAFIQTGIERGTYRDLNPQVVARVFLGMFMIAGFSQDTLMDEDP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
SPGFQREMAETLADIFLNGILTQPAIQKQPEI
CCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCC
>Mature Secondary Structure
MQLSSHSTAPQTDVNHRILEAAQRLFARQGFEKTTTRQLAEAAEIAEGTLFRHFENKKAI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
LVAVVTQGWSEMLTDLLTHLSEMGSYRSIAKLMRERMLTLPKQADLMRVCFMEAQFHPEL
EHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHH
RDRIQAEIISKMTSVVEAFIQTGIERGTYRDLNPQVVARVFLGMFMIAGFSQDTLMDEDP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
SPGFQREMAETLADIFLNGILTQPAIQKQPEI
CCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]