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The map label for this gene is psbC [H]

Identifier: 158334265

GI number: 158334265

Start: 1051497

End: 1052969

Strand: Direct

Name: psbC [H]

Synonym: AM1_1084

Alternate gene names: 158334265

Gene position: 1051497-1052969 (Clockwise)

Preceding gene: 158334264

Following gene: 158334266

Centisome position: 16.17

GC content: 49.76

Gene sequence:

>1473_bases
ATGAAGGTCTGCGCGCTTGGATGGCACCCCAAGACCAAATCCATGAAAACTTCATCTTCCCTGAGGAGGTTCTACCACGT
GGAAACGCCCTTTAATCCGTCTGCGGCTGGTTATGACCGCGCAACCACTGGCTATGGCTGGTGGGCTGGAAATGCACGAT
TAACTGATCTATCTGGTCAGCTAACTGGTGCCCACATTGCCCATGCTGGAATGATTACCTTCTGGGCTGGTGCAATGACT
TTGTTTGAAGTCTCTCACTTCATTCCTGAAAAGCCTATGTACGAGCAAGGCAGCATCCTGCTTGCTCACCTAGCCGCTGA
AGGTTTTGGTGTTGGACCTGGTGGTGAAGTTATTAGCACTTATCCTTATTTTGTGATTGGTGCAATTCACCTAATTGCTT
CTGCTGTCCTCGGTTTTGGTGGCCTTTACCACACATTCAGAGGCCCTGCTAAGTTTGAGGATTACTCTGATTGGTGGGGG
TATGACTGGGAAGACAAAGAAAAGATGATGCAGATCCTGGGGATTCACTTAATCTTCCTCGGAATTGGTGCTCTTGCTTT
TGCTGCAAAAGCCATGTTCTTTGGCGGTCTTTATGATCCCTGGGCTCCTGGTGGTGGAAATGTTCGCCTGATTACTAACC
CAACTTGGAACTTAGGTACTTTCCTGGGTTACATTACCCGATCTCCCTGGGGAGAAGGTGGCTGGATCGTTAGTGTTAAC
AACCTAGAAGACGTTGTAGGTGGTCACCTTCTCGTAGGTGTTCACTACATCTTCGGTGGCGTTTTCCACATTCTTGTTAA
GCCTTGGGGTTGGGTTCGCCGAGCCTATGTCTGGTCTGGTGAAGCCTATCTCTCCTACAGCTTGGGTGCCCTTTACATGT
GTGGCATGATTGCTGTGGGTTATGTCTGGTTTAACAACACTGTTTACCCCAGTGAATTCTACGGTCCTACTGCTGCTGAA
GCTTCTCAGGCTCAGGCAATGACCTTTTTGATTCGTGACCAAAGGTTAGGGGCGAACATCGCTTCTGCCCAAGGTCCTAC
AGGTCTTGGTAAGTATCTGATGCGTTCTCCTTCTGGTGAGATCATCTTCGGTGGTGAGACCATGCGTTTCTGGGATTTCC
GTGGACCTTGGTTGGAGCCCCTTCGTGGACCCAACGGTTTGGACCTCAACAAGCTCAGAAATGATATTCAGCCTTGGCAA
GCTCGTCGTGCGGCTGAGTACATGACTCATGCTCCTTTGGGTGCATTGAACTCTGTAGGTGGTGTGGCAACTGAGATCAA
CTCGGTGAACTATGTTTCTCCCCGTTCTTGGTTATCCACTTCACATTTCTGCCTTGCGTTCTTCTTCTTTGTTGGCCATA
TTTGGCACTCCGGCCGCGCCCGGGCTGCTGCTGCTGGTTTCGAGAAGGGCATTGAGCGGAAGACAGAATACGCACTATCT
CTGCCTGATATCGACGCTACATCAGTTGACTAA

Upstream 100 bases:

>100_bases
ATCGCTCTCAACATGCGTGCTTATGACTTCGTTAGCCAGGAAATCCGGGCTGCTGAAGACCCTGAGTTCGAAACCTTCTA
CACCAAGAACATTCTCTTGA

Downstream 100 bases:

>100_bases
GTTATCTTTAGTAACTTTGATAACTAGCTGAGTAATATCGGCAAGAAAGCCCCTGCCTAAAATAGGAGGGGCTTTCTTAT
GAGTATTTTCGTTGCTAACT

Product: photosystem II CP43 protein PsbC

Products: NA

Alternate protein names: PSII 43 kDa protein; Protein CP-43; Protein P6 [H]

Number of amino acids: Translated: 490; Mature: 490

Protein sequence:

>490_residues
MKVCALGWHPKTKSMKTSSSLRRFYHVETPFNPSAAGYDRATTGYGWWAGNARLTDLSGQLTGAHIAHAGMITFWAGAMT
LFEVSHFIPEKPMYEQGSILLAHLAAEGFGVGPGGEVISTYPYFVIGAIHLIASAVLGFGGLYHTFRGPAKFEDYSDWWG
YDWEDKEKMMQILGIHLIFLGIGALAFAAKAMFFGGLYDPWAPGGGNVRLITNPTWNLGTFLGYITRSPWGEGGWIVSVN
NLEDVVGGHLLVGVHYIFGGVFHILVKPWGWVRRAYVWSGEAYLSYSLGALYMCGMIAVGYVWFNNTVYPSEFYGPTAAE
ASQAQAMTFLIRDQRLGANIASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKLRNDIQPWQ
ARRAAEYMTHAPLGALNSVGGVATEINSVNYVSPRSWLSTSHFCLAFFFFVGHIWHSGRARAAAAGFEKGIERKTEYALS
LPDIDATSVD

Sequences:

>Translated_490_residues
MKVCALGWHPKTKSMKTSSSLRRFYHVETPFNPSAAGYDRATTGYGWWAGNARLTDLSGQLTGAHIAHAGMITFWAGAMT
LFEVSHFIPEKPMYEQGSILLAHLAAEGFGVGPGGEVISTYPYFVIGAIHLIASAVLGFGGLYHTFRGPAKFEDYSDWWG
YDWEDKEKMMQILGIHLIFLGIGALAFAAKAMFFGGLYDPWAPGGGNVRLITNPTWNLGTFLGYITRSPWGEGGWIVSVN
NLEDVVGGHLLVGVHYIFGGVFHILVKPWGWVRRAYVWSGEAYLSYSLGALYMCGMIAVGYVWFNNTVYPSEFYGPTAAE
ASQAQAMTFLIRDQRLGANIASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKLRNDIQPWQ
ARRAAEYMTHAPLGALNSVGGVATEINSVNYVSPRSWLSTSHFCLAFFFFVGHIWHSGRARAAAAGFEKGIERKTEYALS
LPDIDATSVD
>Mature_490_residues
MKVCALGWHPKTKSMKTSSSLRRFYHVETPFNPSAAGYDRATTGYGWWAGNARLTDLSGQLTGAHIAHAGMITFWAGAMT
LFEVSHFIPEKPMYEQGSILLAHLAAEGFGVGPGGEVISTYPYFVIGAIHLIASAVLGFGGLYHTFRGPAKFEDYSDWWG
YDWEDKEKMMQILGIHLIFLGIGALAFAAKAMFFGGLYDPWAPGGGNVRLITNPTWNLGTFLGYITRSPWGEGGWIVSVN
NLEDVVGGHLLVGVHYIFGGVFHILVKPWGWVRRAYVWSGEAYLSYSLGALYMCGMIAVGYVWFNNTVYPSEFYGPTAAE
ASQAQAMTFLIRDQRLGANIASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKLRNDIQPWQ
ARRAAEYMTHAPLGALNSVGGVATEINSVNYVSPRSWLSTSHFCLAFFFFVGHIWHSGRARAAAAGFEKGIERKTEYALS
LPDIDATSVD

Specific function: The 43 kDa protein (p6) is a component of the core of photosystem II. It is a chlorophyll binding protein [H]

COG id: NA

COG function: NA

Gene ontology:
GO:0009521: Photosystem II CP43 protein PsbC
GO:0009523: Photosystem II CP43 protein PsbC
GO:0009767: Photosystem II CP43 protein PsbC
GO:0009772: Photosystem II CP43 protein PsbC
GO:0015979: Photosystem II CP43 protein PsbC
GO:0016020: Photosystem II CP43 protein PsbC
GO:0016168: Photosystem II CP43 protein PsbC
GO:0019684: Photosystem II CP43 protein PsbC
GO:0030076: Photosystem II CP43 protein PsbC
GO:0045156: Photosystem II CP43 protein PsbC

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR005869 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 53927; Mature: 53927

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVCALGWHPKTKSMKTSSSLRRFYHVETPFNPSAAGYDRATTGYGWWAGNARLTDLSGQ
CEEEEECCCCCCCCCHHHHHHHHHEEECCCCCCCCCCCCCCCCCCEEECCCCEEEECCCC
LTGAHIAHAGMITFWAGAMTLFEVSHFIPEKPMYEQGSILLAHLAAEGFGVGPGGEVIST
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHCCCCCCCCCCHHHC
YPYFVIGAIHLIASAVLGFGGLYHTFRGPAKFEDYSDWWGYDWEDKEKMMQILGIHLIFL
CHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
GIGALAFAAKAMFFGGLYDPWAPGGGNVRLITNPTWNLGTFLGYITRSPWGEGGWIVSVN
HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEC
NLEDVVGGHLLVGVHYIFGGVFHILVKPWGWVRRAYVWSGEAYLSYSLGALYMCGMIAVG
CHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHEEEEEECCCEEEEHHHHHHHHHHHHHHH
YVWFNNTVYPSEFYGPTAAEASQAQAMTFLIRDQRLGANIASAQGPTGLGKYLMRSPSGE
HHEECCEECCHHCCCCCCCHHHHHHHHHHEEEHHHCCCCCCCCCCCCHHHHHHHCCCCCC
IIFGGETMRFWDFRGPWLEPLRGPNGLDLNKLRNDIQPWQARRAAEYMTHAPLGALNSVG
EEECCCEEEEEECCCCCHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHCC
GVATEINSVNYVSPRSWLSTSHFCLAFFFFVGHIWHSGRARAAAAGFEKGIERKTEYALS
CHHHHCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEE
LPDIDATSVD
CCCCCCCCCC
>Mature Secondary Structure
MKVCALGWHPKTKSMKTSSSLRRFYHVETPFNPSAAGYDRATTGYGWWAGNARLTDLSGQ
CEEEEECCCCCCCCCHHHHHHHHHEEECCCCCCCCCCCCCCCCCCEEECCCCEEEECCCC
LTGAHIAHAGMITFWAGAMTLFEVSHFIPEKPMYEQGSILLAHLAAEGFGVGPGGEVIST
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHCCCCCCCCCCHHHC
YPYFVIGAIHLIASAVLGFGGLYHTFRGPAKFEDYSDWWGYDWEDKEKMMQILGIHLIFL
CHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
GIGALAFAAKAMFFGGLYDPWAPGGGNVRLITNPTWNLGTFLGYITRSPWGEGGWIVSVN
HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEC
NLEDVVGGHLLVGVHYIFGGVFHILVKPWGWVRRAYVWSGEAYLSYSLGALYMCGMIAVG
CHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHEEEEEECCCEEEEHHHHHHHHHHHHHHH
YVWFNNTVYPSEFYGPTAAEASQAQAMTFLIRDQRLGANIASAQGPTGLGKYLMRSPSGE
HHEECCEECCHHCCCCCCCHHHHHHHHHHEEEHHHCCCCCCCCCCCCHHHHHHHCCCCCC
IIFGGETMRFWDFRGPWLEPLRGPNGLDLNKLRNDIQPWQARRAAEYMTHAPLGALNSVG
EEECCCEEEEEECCCCCHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHCC
GVATEINSVNYVSPRSWLSTSHFCLAFFFFVGHIWHSGRARAAAAGFEKGIERKTEYALS
CHHHHCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEE
LPDIDATSVD
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3138165 [H]