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The map label for this gene is ycf4 [H]

Identifier: 158334263

GI number: 158334263

Start: 1049374

End: 1049937

Strand: Reverse

Name: ycf4 [H]

Synonym: AM1_1082

Alternate gene names: 158334263

Gene position: 1049937-1049374 (Counterclockwise)

Preceding gene: 158334268

Following gene: 158334262

Centisome position: 16.14

GC content: 45.74

Gene sequence:

>564_bases
ATGACCACACAGAAACTATTAGATAAGCAAACTTTGCGTTACGAAGTTCTTGGGACTCGCCGGTTTAGCAATTACATGAT
CGCGACGATGGTCTCCATTGGAGGGGTTGGTTTTTTCTTAGCTGGTCTTTCTAGCTATTTCAAAGTCGATCTCCTGCCAA
CTGGTAATGCTGTTGATCTAATTTTTATCCCTCAAGGCATCGCTCTTTCCTTCTACGGTACTTGTGGTTTACTGCTCGCA
ACCTACTTATGGCTAACCATAAGCTGGAACGTCGGAGCCGGTTTTAATGAATTCAGTCAAGATTCTGGTAAATTTCGACT
CTTTCGTTGGGGCCGCCCAGGCAAGAACCGAAAAGTTGAGCAAACATACCCTTTAGAGAATATTCAATCCGTCCAGATCA
AGATCCGTGAGGGACTCAATCCCCAACGGACCATCTATCTGAGAATCAAAGGGCGTAATGATATTCCTCTCACCCGAGCG
GGGCAACCTATGGCTCTGGACAAAATTGAGAATCAAGCAGCTGAGATCGCTCGTTTCTTGGGCGTTCCCATGGAAGGTTT
GTAA

Upstream 100 bases:

>100_bases
TAGGAGTCAGCTATAGCCTCATCAATTGTTGAGCTGGACAGCTTATACTCATATATCAGTGCTCATCATTAGTTTAGGAA
TCACAAGAACTTATCCGACC

Downstream 100 bases:

>100_bases
AACCCAAAAATGTAGTGTATTGACTCCTTATGCTTCACTCAACTAAAGCTATCAGCTTCTTCAGATCATTTTGGGTGATG
GTACTCGTGTTCTTATTAAT

Product: photosystem I assembly protein Ycf4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MTTQKLLDKQTLRYEVLGTRRFSNYMIATMVSIGGVGFFLAGLSSYFKVDLLPTGNAVDLIFIPQGIALSFYGTCGLLLA
TYLWLTISWNVGAGFNEFSQDSGKFRLFRWGRPGKNRKVEQTYPLENIQSVQIKIREGLNPQRTIYLRIKGRNDIPLTRA
GQPMALDKIENQAAEIARFLGVPMEGL

Sequences:

>Translated_187_residues
MTTQKLLDKQTLRYEVLGTRRFSNYMIATMVSIGGVGFFLAGLSSYFKVDLLPTGNAVDLIFIPQGIALSFYGTCGLLLA
TYLWLTISWNVGAGFNEFSQDSGKFRLFRWGRPGKNRKVEQTYPLENIQSVQIKIREGLNPQRTIYLRIKGRNDIPLTRA
GQPMALDKIENQAAEIARFLGVPMEGL
>Mature_186_residues
TTQKLLDKQTLRYEVLGTRRFSNYMIATMVSIGGVGFFLAGLSSYFKVDLLPTGNAVDLIFIPQGIALSFYGTCGLLLAT
YLWLTISWNVGAGFNEFSQDSGKFRLFRWGRPGKNRKVEQTYPLENIQSVQIKIREGLNPQRTIYLRIKGRNDIPLTRAG
QPMALDKIENQAAEIARFLGVPMEGL

Specific function: Seems to be required for the assembly of the photosystem I complex [H]

COG id: NA

COG function: NA

Gene ontology:
GO:0009522: Photosystem I assembly protein ycf4
GO:0009579: Photosystem I assembly protein ycf4
GO:0015979: Photosystem I assembly protein ycf4
GO:0016020: Photosystem I assembly protein ycf4
GO:0016021: Photosystem I assembly protein ycf4
GO:0042651: Photosystem I assembly protein ycf4

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ycf4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003359
- ProDom:   PD003698 [H]

Pfam domain/function: PF02392 Ycf4 [H]

EC number: NA

Molecular weight: Translated: 21032; Mature: 20901

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQKLLDKQTLRYEVLGTRRFSNYMIATMVSIGGVGFFLAGLSSYFKVDLLPTGNAVDL
CCHHHHHHHHHHEEEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEEEEECCCEEEE
IFIPQGIALSFYGTCGLLLATYLWLTISWNVGAGFNEFSQDSGKFRLFRWGRPGKNRKVE
EEECCCCEEEEHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
QTYPLENIQSVQIKIREGLNPQRTIYLRIKGRNDIPLTRAGQPMALDKIENQAAEIARFL
CCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
GVPMEGL
CCCCCCC
>Mature Secondary Structure 
TTQKLLDKQTLRYEVLGTRRFSNYMIATMVSIGGVGFFLAGLSSYFKVDLLPTGNAVDL
CHHHHHHHHHHEEEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEEEEECCCEEEE
IFIPQGIALSFYGTCGLLLATYLWLTISWNVGAGFNEFSQDSGKFRLFRWGRPGKNRKVE
EEECCCCEEEEHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
QTYPLENIQSVQIKIREGLNPQRTIYLRIKGRNDIPLTRAGQPMALDKIENQAAEIARFL
CCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
GVPMEGL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA