Click here to switch to the map view.

The map label for this gene is rimP

Identifier: 158334114

GI number: 158334114

Start: 897827

End: 898279

Strand: Direct

Name: rimP

Synonym: AM1_0930

Alternate gene names: 158334114

Gene position: 897827-898279 (Clockwise)

Preceding gene: 158334113

Following gene: 158334115

Centisome position: 13.8

GC content: 50.99

Gene sequence:

>453_bases
TTGATCCCCAAAGTGATCGACCTGGCTGCCCCTGTCGCAGCACAATTTAATCTGGAAGTGGTCGGTGCTGTGTTTCAGAC
TAACCAAAGTCCACCGGTTTTACGGGTTGACATTCGCAATTGTGATGCAGACACGGGTTTGGAAGATTGCGAGAAAATGA
GTCGTGCCTTGGAAGCGGTCTTGGACGAAGATGATGTTTTCCCAGAGGCCTATGTGCTGGAGATCTCTAGTCCTGGGTTG
TCAACGCTACTGACTTGCGATCGCGACTTCGTTTCCTTCAGAGGCTTCCCCGTGCTGGTCCAAACCCATCAGCCTTATCG
GGGCCATCATCAGTGGATTGGTAACCTCACCGGCCGTGATGAGAAATTCGTCCAGCTTAATCAAAAAGGTCGCCCCATCA
AGATTCCCCGAGAAGAAATTCTTCAGGTGCAGCTCCACGACTCTCCTGAATAA

Upstream 100 bases:

>100_bases
TGGTGGGCGTCTGCCCGCGGCTCATGCCAAAAACATGAGCTTCCAAGGTGGGTATTAACCCACTTTTTTTATTGTCAGGG
TTATTTCCATGACACATCCA

Downstream 100 bases:

>100_bases
CTCCCAAGACATCTACCTGTCTCGAATCTCTCCCTCACACCCTAGTTCAGCAAGGAGTAAGCCTATGTCCATGGTCCAGT
TACCGGGTTTAGCGGAAATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MIPKVIDLAAPVAAQFNLEVVGAVFQTNQSPPVLRVDIRNCDADTGLEDCEKMSRALEAVLDEDDVFPEAYVLEISSPGL
STLLTCDRDFVSFRGFPVLVQTHQPYRGHHQWIGNLTGRDEKFVQLNQKGRPIKIPREEILQVQLHDSPE

Sequences:

>Translated_150_residues
MIPKVIDLAAPVAAQFNLEVVGAVFQTNQSPPVLRVDIRNCDADTGLEDCEKMSRALEAVLDEDDVFPEAYVLEISSPGL
STLLTCDRDFVSFRGFPVLVQTHQPYRGHHQWIGNLTGRDEKFVQLNQKGRPIKIPREEILQVQLHDSPE
>Mature_150_residues
MIPKVIDLAAPVAAQFNLEVVGAVFQTNQSPPVLRVDIRNCDADTGLEDCEKMSRALEAVLDEDDVFPEAYVLEISSPGL
STLLTCDRDFVSFRGFPVLVQTHQPYRGHHQWIGNLTGRDEKFVQLNQKGRPIKIPREEILQVQLHDSPE

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_ACAM1 (B0BZP6)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001515286.1
- ProteinModelPortal:   B0BZP6
- SMR:   B0BZP6
- GeneID:   5679756
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_0930
- HOGENOM:   HBG668072
- OMA:   AYVLEIS
- BioCyc:   AMAR329726:AM1_0930-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 16851; Mature: 16851

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPKVIDLAAPVAAQFNLEVVGAVFQTNQSPPVLRVDIRNCDADTGLEDCEKMSRALEAV
CCCCHHHHHCCCHHHCCCEEEEHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
LDEDDVFPEAYVLEISSPGLSTLLTCDRDFVSFRGFPVLVQTHQPYRGHHQWIGNLTGRD
HCCCCCCCCEEEEEECCCCCCEEEECCCHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCC
EKFVQLNQKGRPIKIPREEILQVQLHDSPE
CEEEEECCCCCCEECCHHHEEEEEECCCCC
>Mature Secondary Structure
MIPKVIDLAAPVAAQFNLEVVGAVFQTNQSPPVLRVDIRNCDADTGLEDCEKMSRALEAV
CCCCHHHHHCCCHHHCCCEEEEHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
LDEDDVFPEAYVLEISSPGLSTLLTCDRDFVSFRGFPVLVQTHQPYRGHHQWIGNLTGRD
HCCCCCCCCEEEEEECCCCCCEEEECCCHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCC
EKFVQLNQKGRPIKIPREEILQVQLHDSPE
CEEEEECCCCCCEECCHHHEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA