BacMap

Definition	Acaryochloris marina MBIC11017 chromosome, complete genome.
Accession	NC_009925
Length	6,503,724

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The map label for this gene is yoxD [H]

Identifier: 158333916

GI number: 158333916

Start: 712933

End: 713754

Strand: Direct

Name: yoxD [H]

Synonym: AM1_0728

Alternate gene names: 158333916

Gene position: 712933-713754 (Clockwise)

Preceding gene: 158333915

Following gene: 158333917

Centisome position: 10.96

GC content: 49.88

Gene sequence:

>822_bases
ATGGACTTTAATCAGCGCCATATCATGATTACGGGTGGATCGAGTGGCATTGGTAAAGCCACTGCCTGCCTCCTTGCCAA
TCAGGGGGCCAATCTCTCCTTGATTGCTCGCACACCGAGTCAATTAGACATCGCAGTCCAGGAGATTACAGCGGCTCAGG
TCCAGTCAGACCAGCAGGCTTTAGCATTCGCAGCAGATGTAGCTGACCGAGAAGCCTCAACTCAAGCCATCCAAACCGCA
ACGGCTCAACTGGGACCGCCCGATATTTTAATTACCGCTGCAGGGATAGCTCGTCCAGGCTATTTTCAAGAAATACCGCT
AGAGGTTTTTGAGCAAACGATGGCGGTCAACTACTTTGGTACCTTGTATGCGATCAAAGCGGTTTTGCCCCTTATGGAGG
AACGTCAGCGGGGGCATATTGTGTTGATTTCGTCAGGGGCAGGACTGGTAGGACTCTTTGGTTATACCCCCTATAGCCCT
AGTAAGTTTGCACTGCGGGGGTTGGCCGAATCTTTACGGGGAGAACTGAAAGGGATTGGAATTGGTTTATCGATTGTTTA
TCCCCCCGATACCGATACACCTCAACTGGAAGCAGAGAATAAAACCAAGCCTCCAGAAACAAAAAATATCACCGCCTCGG
CGGAGATGTGGCAACCGGAAGCTGTGGCCCAAGAGATTGTCAAAGGGATTAAACACCAAAAGTTTGTGGTGGCGCCTGGT
TTAGAAATGGGGCTATTGGCTAAGCTGCACAGTGTTTTAGCCCCAGGGCTGAACTGGTATTTTGATCGGATTGTTACGAA
GACGAGATCGCAATCCTCTTAA

Upstream 100 bases:

>100_bases
TCCAGAGATCTGGAATTATCTATTACGGCAAATTGTTCATCGCTAAGGGTGAGGGTTCCAAGGCAATTTCTATCATTCAG
GACAACCTTTGAGTTAGCGA

Downstream 100 bases:

>100_bases
TGGACGTTTCTAACCCCAAAGACCTGAACCTGAATCGCTTGCAGGAGTGCGATCGCAGTTTTCATGATTGGTATCGCTTT
ATCTTGTCCTTTCCGCCCCA

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MDFNQRHIMITGGSSGIGKATACLLANQGANLSLIARTPSQLDIAVQEITAAQVQSDQQALAFAADVADREASTQAIQTA
TAQLGPPDILITAAGIARPGYFQEIPLEVFEQTMAVNYFGTLYAIKAVLPLMEERQRGHIVLISSGAGLVGLFGYTPYSP
SKFALRGLAESLRGELKGIGIGLSIVYPPDTDTPQLEAENKTKPPETKNITASAEMWQPEAVAQEIVKGIKHQKFVVAPG
LEMGLLAKLHSVLAPGLNWYFDRIVTKTRSQSS

Sequences:

>Translated_273_residues
MDFNQRHIMITGGSSGIGKATACLLANQGANLSLIARTPSQLDIAVQEITAAQVQSDQQALAFAADVADREASTQAIQTA
TAQLGPPDILITAAGIARPGYFQEIPLEVFEQTMAVNYFGTLYAIKAVLPLMEERQRGHIVLISSGAGLVGLFGYTPYSP
SKFALRGLAESLRGELKGIGIGLSIVYPPDTDTPQLEAENKTKPPETKNITASAEMWQPEAVAQEIVKGIKHQKFVVAPG
LEMGLLAKLHSVLAPGLNWYFDRIVTKTRSQSS
>Mature_273_residues
MDFNQRHIMITGGSSGIGKATACLLANQGANLSLIARTPSQLDIAVQEITAAQVQSDQQALAFAADVADREASTQAIQTA
TAQLGPPDILITAAGIARPGYFQEIPLEVFEQTMAVNYFGTLYAIKAVLPLMEERQRGHIVLISSGAGLVGLFGYTPYSP
SKFALRGLAESLRGELKGIGIGLSIVYPPDTDTPQLEAENKTKPPETKNITASAEMWQPEAVAQEIVKGIKHQKFVVAPG
LEMGLLAKLHSVLAPGLNWYFDRIVTKTRSQSS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4503817, Length=250, Percent_Identity=42, Blast_Score=206, Evalue=2e-53,
Organism=Homo sapiens, GI20149619, Length=270, Percent_Identity=30.7407407407407, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI7706318, Length=182, Percent_Identity=31.3186813186813, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI40807363, Length=232, Percent_Identity=30.1724137931034, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI7657478, Length=251, Percent_Identity=30.2788844621514, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI210032110, Length=242, Percent_Identity=28.5123966942149, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI25282469, Length=217, Percent_Identity=30.4147465437788, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI40254992, Length=197, Percent_Identity=32.48730964467, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI157739938, Length=239, Percent_Identity=27.6150627615063, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI310128830, Length=262, Percent_Identity=26.7175572519084, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI310115468, Length=262, Percent_Identity=26.7175572519084, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI142976729, Length=270, Percent_Identity=27.037037037037, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI4504505, Length=197, Percent_Identity=26.3959390862944, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI40548397, Length=192, Percent_Identity=28.6458333333333, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI214010158, Length=192, Percent_Identity=28.6458333333333, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI214010156, Length=192, Percent_Identity=28.6458333333333, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI22758144, Length=192, Percent_Identity=28.6458333333333, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI32483357, Length=219, Percent_Identity=29.2237442922374, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI40254986, Length=182, Percent_Identity=31.3186813186813, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI15277342, Length=228, Percent_Identity=27.1929824561404, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI223718074, Length=187, Percent_Identity=31.0160427807487, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=29.8342541436464, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI87082100, Length=240, Percent_Identity=32.0833333333333, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786812, Length=220, Percent_Identity=29.5454545454545, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786701, Length=234, Percent_Identity=29.0598290598291, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790717, Length=183, Percent_Identity=29.5081967213115, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787335, Length=201, Percent_Identity=28.3582089552239, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787820, Length=184, Percent_Identity=27.7173913043478, Blast_Score=65, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=203, Percent_Identity=33.9901477832512, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI71997402, Length=181, Percent_Identity=32.0441988950276, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17564282, Length=203, Percent_Identity=30.5418719211823, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17508895, Length=243, Percent_Identity=28.3950617283951, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193203115, Length=198, Percent_Identity=28.2828282828283, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI193203117, Length=192, Percent_Identity=28.6458333333333, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=191, Percent_Identity=30.3664921465969, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=184, Percent_Identity=30.4347826086957, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI25147288, Length=224, Percent_Identity=27.6785714285714, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71994604, Length=181, Percent_Identity=32.0441988950276, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=181, Percent_Identity=32.0441988950276, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17570069, Length=181, Percent_Identity=29.2817679558011, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=202, Percent_Identity=29.7029702970297, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=199, Percent_Identity=29.1457286432161, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=179, Percent_Identity=31.8435754189944, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=193, Percent_Identity=31.0880829015544, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=172, Percent_Identity=29.6511627906977, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=247, Percent_Identity=29.5546558704453, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=193, Percent_Identity=30.0518134715026, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=249, Percent_Identity=29.718875502008, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=208, Percent_Identity=29.8076923076923, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=197, Percent_Identity=29.9492385786802, Blast_Score=78, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6319742, Length=284, Percent_Identity=27.8169014084507, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6319635, Length=196, Percent_Identity=30.6122448979592, Blast_Score=66, Evalue=6e-12,
Organism=Drosophila melanogaster, GI21356301, Length=251, Percent_Identity=35.8565737051793, Blast_Score=160, Evalue=7e-40,
Organism=Drosophila melanogaster, GI24581726, Length=201, Percent_Identity=30.3482587064677, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI281364892, Length=226, Percent_Identity=28.3185840707965, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI21358495, Length=224, Percent_Identity=29.9107142857143, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24640492, Length=196, Percent_Identity=30.1020408163265, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI28571387, Length=219, Percent_Identity=31.5068493150685, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24641232, Length=238, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI23397609, Length=188, Percent_Identity=30.8510638297872, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21357041, Length=187, Percent_Identity=32.620320855615, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24644339, Length=194, Percent_Identity=32.4742268041237, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24580925, Length=196, Percent_Identity=30.1020408163265, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI221510726, Length=189, Percent_Identity=29.1005291005291, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24639444, Length=225, Percent_Identity=27.5555555555556, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI17737361, Length=202, Percent_Identity=29.7029702970297, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI28571526, Length=187, Percent_Identity=32.0855614973262, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI18859837, Length=177, Percent_Identity=29.3785310734463, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21355631, Length=177, Percent_Identity=28.2485875706215, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI116007234, Length=201, Percent_Identity=30.3482587064677, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI116007236, Length=223, Percent_Identity=26.457399103139, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007232, Length=184, Percent_Identity=30.4347826086957, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI116007238, Length=181, Percent_Identity=28.1767955801105, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21357673, Length=192, Percent_Identity=27.0833333333333, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29233; Mature: 29233

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFNQRHIMITGGSSGIGKATACLLANQGANLSLIARTPSQLDIAVQEITAAQVQSDQQA
CCCCCCEEEEECCCCCCCHHHEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCHHH
LAFAADVADREASTQAIQTATAQLGPPDILITAAGIARPGYFQEIPLEVFEQTMAVNYFG
HHHHHHHHHCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHH
TLYAIKAVLPLMEERQRGHIVLISSGAGLVGLFGYTPYSPSKFALRGLAESLRGELKGIG
HHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCEEE
IGLSIVYPPDTDTPQLEAENKTKPPETKNITASAEMWQPEAVAQEIVKGIKHQKFVVAPG
EEEEEEECCCCCCCCCCCCCCCCCCCCCCEECHHHHCCHHHHHHHHHHHHCCCEEEEECC
LEMGLLAKLHSVLAPGLNWYFDRIVTKTRSQSS
CCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDFNQRHIMITGGSSGIGKATACLLANQGANLSLIARTPSQLDIAVQEITAAQVQSDQQA
CCCCCCEEEEECCCCCCCHHHEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCHHH
LAFAADVADREASTQAIQTATAQLGPPDILITAAGIARPGYFQEIPLEVFEQTMAVNYFG
HHHHHHHHHCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHH
TLYAIKAVLPLMEERQRGHIVLISSGAGLVGLFGYTPYSPSKFALRGLAESLRGELKGIG
HHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCEEE
IGLSIVYPPDTDTPQLEAENKTKPPETKNITASAEMWQPEAVAQEIVKGIKHQKFVVAPG
EEEEEEECCCCCCCCCCCCCCCCCCCCCCEECHHHHCCHHHHHHHHHHHHCCCEEEEECC
LEMGLLAKLHSVLAPGLNWYFDRIVTKTRSQSS
CCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1849493; 9384377; 3118336 [H]