Click here to switch to the map view.

The map label for this gene is cph2 [H]

Identifier: 158333902

GI number: 158333902

Start: 695256

End: 696575

Strand: Direct

Name: cph2 [H]

Synonym: AM1_0714

Alternate gene names: 158333902

Gene position: 695256-696575 (Clockwise)

Preceding gene: 158333900

Following gene: 158333903

Centisome position: 10.69

GC content: 49.24

Gene sequence:

>1320_bases
ATGTCTGAGGGAAAAGAATCTTCGTTGTTGGTTAACTTTCAGCCTGGAGAGCTAATTTTTGCGACTGGTGAAGAAGGTCA
CCATGCCTACATTATTGAATCAGGCCAAGTCGATATTTTTGTGACCACAACGGGAAAAGACGTTTCCTTTAAGACCCTGG
CCAAGGGAGATGTATTTGGTGAGATGGCTGTCATTGACGCTTCGCCCCGCTCAGCCTCTGCTCGGGCACTCACAGAGACC
TGCTGTGTTGTGATTTCCCGCGAGCAAATCTCAGATCGGATTGAAGCCTCCGATCCTGTGGTCAAGCTATTAGTCTCGCG
GTTATTGGACCATATTCGGTCCCTCAATACTGGCGTCTCCCAGGCTGAAATGTCCGCTTCAGACCTGCCGAATTCCTCGG
TAACGTCATCGTCTCCTGTCTTGCCTCACCAACCCGTCTTGGAAAAAATGCGGTTGGAGTCGGAATTGCTAGATGCGATC
GCAACCAATGCATTTATTCCCCATTACCAGCCCCTCGTTGATTTAGAGACGAAAGAGATCCTGGGATTTGAGTTTTTAAT
TCGCTGGAAAAGTCCGACCCGAGGCTGGGTCTCGCCTGGGCTGTTTATCGATACGGCGGAAGAAACCTCACTCATTCTTC
CCATCGGTCGTTGGGTGATTGAAAATGCCTGTACGGATCTCAATCGCTTTAATCAGGCTCTCAACCGTTCCTTGGGCACG
TCTGGGAAAACAAGGCCACTATTTATCAGCGTTAACGTCTCTGCTCGTCAGTTTCAGGCACCACAATTCAACGAGGAATT
GCTGGAGATTCTGCAGCGACACCAGATTCCCCATTCCCAGATTAAGCTCGAGGTTACCGAACGGGTGTTGATGGAAGGGA
CATCGGCGATCAACATCATTCAGCAATGCCGACAGCTTGGCTTTCATCTGGCTCTGGATGATTTTGGGACGGGATTTTCA
AGCCTGACTTATCTTGCCAAGTTCGAAATTGATAGTCTCAAGATCGACCAGTATTTTGTCCGTCAAATGTTAACCCATCC
CCGCACATTGGCTCTGATGAAACATATTTTGGCCATGACACGGGATTTGAGGATGGTTTCAGTGGCTGAAGGGGTGGAAA
CCCAGGAAGAATTTGATACTCTGCGACGCTTGGGCTGTCAAATTGGACAAGGGTATTTATTTGGTAAACCCCTCCCTTTT
GAATCTGCCCAACACTTACTGCTAGAGAACTATCGTCGCCCATTGGCACCCACTAGCCCACTTCTGGCCAGTAGCAAGGT
TGAAAACAGCGTGCCTCTCCAAACGGGCGCAAGGGTTTAG

Upstream 100 bases:

>100_bases
ACTTTGAAAAATCCTACATGACTTTAGCAGTATTGATTTTGGGCATCCTAAGACTAGGTAAATATCGATTTTTGAGAGTT
CTTATTGAGAACCAAGCATT

Downstream 100 bases:

>100_bases
GTTAGACCGTTTTCTGAGCATCACCCAGTCCTGAAAGACTCCTCCCCTCTGCGTCTTTAGCCTTCGAACTTCAGAGGTCT
ATATAACTGAATAAAGACTT

Product: EAL and cyclic nucleotide-binding domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MSEGKESSLLVNFQPGELIFATGEEGHHAYIIESGQVDIFVTTTGKDVSFKTLAKGDVFGEMAVIDASPRSASARALTET
CCVVISREQISDRIEASDPVVKLLVSRLLDHIRSLNTGVSQAEMSASDLPNSSVTSSSPVLPHQPVLEKMRLESELLDAI
ATNAFIPHYQPLVDLETKEILGFEFLIRWKSPTRGWVSPGLFIDTAEETSLILPIGRWVIENACTDLNRFNQALNRSLGT
SGKTRPLFISVNVSARQFQAPQFNEELLEILQRHQIPHSQIKLEVTERVLMEGTSAINIIQQCRQLGFHLALDDFGTGFS
SLTYLAKFEIDSLKIDQYFVRQMLTHPRTLALMKHILAMTRDLRMVSVAEGVETQEEFDTLRRLGCQIGQGYLFGKPLPF
ESAQHLLLENYRRPLAPTSPLLASSKVENSVPLQTGARV

Sequences:

>Translated_439_residues
MSEGKESSLLVNFQPGELIFATGEEGHHAYIIESGQVDIFVTTTGKDVSFKTLAKGDVFGEMAVIDASPRSASARALTET
CCVVISREQISDRIEASDPVVKLLVSRLLDHIRSLNTGVSQAEMSASDLPNSSVTSSSPVLPHQPVLEKMRLESELLDAI
ATNAFIPHYQPLVDLETKEILGFEFLIRWKSPTRGWVSPGLFIDTAEETSLILPIGRWVIENACTDLNRFNQALNRSLGT
SGKTRPLFISVNVSARQFQAPQFNEELLEILQRHQIPHSQIKLEVTERVLMEGTSAINIIQQCRQLGFHLALDDFGTGFS
SLTYLAKFEIDSLKIDQYFVRQMLTHPRTLALMKHILAMTRDLRMVSVAEGVETQEEFDTLRRLGCQIGQGYLFGKPLPF
ESAQHLLLENYRRPLAPTSPLLASSKVENSVPLQTGARV
>Mature_438_residues
SEGKESSLLVNFQPGELIFATGEEGHHAYIIESGQVDIFVTTTGKDVSFKTLAKGDVFGEMAVIDASPRSASARALTETC
CVVISREQISDRIEASDPVVKLLVSRLLDHIRSLNTGVSQAEMSASDLPNSSVTSSSPVLPHQPVLEKMRLESELLDAIA
TNAFIPHYQPLVDLETKEILGFEFLIRWKSPTRGWVSPGLFIDTAEETSLILPIGRWVIENACTDLNRFNQALNRSLGTS
GKTRPLFISVNVSARQFQAPQFNEELLEILQRHQIPHSQIKLEVTERVLMEGTSAINIIQQCRQLGFHLALDDFGTGFSS
LTYLAKFEIDSLKIDQYFVRQMLTHPRTLALMKHILAMTRDLRMVSVAEGVETQEEFDTLRRLGCQIGQGYLFGKPLPFE
SAQHLLLENYRRPLAPTSPLLASSKVENSVPLQTGARV

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=258, Percent_Identity=38.3720930232558, Blast_Score=176, Evalue=3e-45,
Organism=Escherichia coli, GI87081921, Length=265, Percent_Identity=38.8679245283019, Blast_Score=175, Evalue=4e-45,
Organism=Escherichia coli, GI1788502, Length=269, Percent_Identity=31.2267657992565, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=31.9838056680162, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI87081743, Length=257, Percent_Identity=34.2412451361868, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI226510982, Length=261, Percent_Identity=33.7164750957854, Blast_Score=142, Evalue=6e-35,
Organism=Escherichia coli, GI87081845, Length=249, Percent_Identity=34.136546184739, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1787055, Length=235, Percent_Identity=32.7659574468085, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI87081980, Length=254, Percent_Identity=32.2834645669291, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1786507, Length=242, Percent_Identity=32.2314049586777, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1788849, Length=253, Percent_Identity=30.0395256916996, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI87082096, Length=158, Percent_Identity=32.2784810126582, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 48820; Mature: 48688

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS00889 CNMP_BINDING_2 ; PS50042 CNMP_BINDING_3 ; PS50007 PIPLC_X_DOMAIN ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEGKESSLLVNFQPGELIFATGEEGHHAYIIESGQVDIFVTTTGKDVSFKTLAKGDVFG
CCCCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEEECCCCCCC
EMAVIDASPRSASARALTETCCVVISREQISDRIEASDPVVKLLVSRLLDHIRSLNTGVS
CEEEEECCCCCCHHHHHHHHHHHHEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCH
QAEMSASDLPNSSVTSSSPVLPHQPVLEKMRLESELLDAIATNAFIPHYQPLVDLETKEI
HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
LGFEFLIRWKSPTRGWVSPGLFIDTAEETSLILPIGRWVIENACTDLNRFNQALNRSLGT
HCEEEEEEECCCCCCCCCCCEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCC
SGKTRPLFISVNVSARQFQAPQFNEELLEILQRHQIPHSQIKLEVTERVLMEGTSAINII
CCCCCEEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCHHHEEHHHHHHHHHCCCHHHHHH
QQCRQLGFHLALDDFGTGFSSLTYLAKFEIDSLKIDQYFVRQMLTHPRTLALMKHILAMT
HHHHHCCCEEEEHHHCCCHHHHHHHHEEECCCEEHHHHHHHHHHCCCHHHHHHHHHHHHH
RDLRMVSVAEGVETQEEFDTLRRLGCQIGQGYLFGKPLPFESAQHLLLENYRRPLAPTSP
HCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHCCCCCCCCCC
LLASSKVENSVPLQTGARV
CHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SEGKESSLLVNFQPGELIFATGEEGHHAYIIESGQVDIFVTTTGKDVSFKTLAKGDVFG
CCCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEEECCCCCCC
EMAVIDASPRSASARALTETCCVVISREQISDRIEASDPVVKLLVSRLLDHIRSLNTGVS
CEEEEECCCCCCHHHHHHHHHHHHEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCH
QAEMSASDLPNSSVTSSSPVLPHQPVLEKMRLESELLDAIATNAFIPHYQPLVDLETKEI
HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
LGFEFLIRWKSPTRGWVSPGLFIDTAEETSLILPIGRWVIENACTDLNRFNQALNRSLGT
HCEEEEEEECCCCCCCCCCCEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCC
SGKTRPLFISVNVSARQFQAPQFNEELLEILQRHQIPHSQIKLEVTERVLMEGTSAINII
CCCCCEEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCHHHEEHHHHHHHHHCCCHHHHHH
QQCRQLGFHLALDDFGTGFSSLTYLAKFEIDSLKIDQYFVRQMLTHPRTLALMKHILAMT
HHHHHCCCEEEEHHHCCCHHHHHHHHEEECCCEEHHHHHHHHHHCCCHHHHHHHHHHHHH
RDLRMVSVAEGVETQEEFDTLRRLGCQIGQGYLFGKPLPFESAQHLLLENYRRPLAPTSP
HCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHCCCCCCCCCC
LLASSKVENSVPLQTGARV
CHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]