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The map label for this gene is secD [H]

Identifier: 158333883

GI number: 158333883

Start: 675785

End: 677212

Strand: Reverse

Name: secD [H]

Synonym: AM1_0695

Alternate gene names: 158333883

Gene position: 677212-675785 (Counterclockwise)

Preceding gene: 158333884

Following gene: 158333882

Centisome position: 10.41

GC content: 51.26

Gene sequence:

>1428_bases
GTGCTTAAACAACAACGCTTTTTACTAGCTCTCATTGCCCTATTAGTGGTGGGGGCATTAATCGTCGTCACCCCGTTTGG
CAAGCAGTATGGTCTGGGCAAGATCAATCTGGGACTAGACCTTAGGGGCGGGTCTCAACTCACCCTTCAGGTTAACCCGA
CGGAAGAAGTGAAAGACATCACCCCCAACGTGATGGAAGCGGTGCAAACCGTGGTGGCCAATCGCCTAAACCCTGAAGGG
GTTTCGGAAATCGTGGTCCAGACTGTGGGTAGCCAGCAAATTCTCGTTCAGCTTCCTGGCGTTAGCGATCCCAAAGACGC
TGAACAATTGCTTAGCCAAGTTGCCCAGCTCGATTTTCGGCGTCCCAACAATGCCATCTTGGCGCAAGTCAATGTCCGTA
GCAGTGAACTACAGCGATTGTTACAGAAGCTACCCGAAGCAGAAAAGGCTGGTGATGCCGCCGCCCTCGCAAAGCTCCAG
GGAGAAGTCCAGCAGAAACAAAAGCAGCTGACTGAGCTACAAGATCAGTTCTTTGTCAAAACGGACTTAACGGGAGAAGA
CCTCAACGATGCGGGGTATGCCATTTCCCAATCTCAACCGAATAAATGGGATGTCACCCTTCGGTTTGATGTCGATGGCG
GCAAAAAATTTGCGGCCCTCACGAAAAGTCTAGCGGGTACGGGTCAGCCCTTAGGAATTTTTCTAGACGGGAAATCCATT
AGTCAAGCCACCGTCAGCGACCGATTTAAGGCCAATGGTATTACGGGTGGTGCTGCCATTATCACGGGCAACTTTGAGCT
AGAAGATGCCAAGTTATTAGCCAATCAGCTCAAAGGCGGCTCCCTCCCCGTACCCGTTAAAGTCGAAGAGATTCGCACCG
TGGGAGCTACCCTGGGTCAGGACAGTATCCGTCAAAGTGTCTATGCCGGGATTGGTGGGCTGATTCTGGTGCTGATCTTT
ATGGGAGTGTGGTACCGTCTGCCTGGTTTGATCGCAGACGTAGCCCTTTGCGTTTATGGTCTTCTCACGTTTGCCTGTTA
TGTCTTGTTTGGCGTTACCCTGACTTTGCCGGGAATCGCGGGATTTATCCTCAGTATCGGTATGGCCGTGGATGCCAATA
TCCTTATTTTTGAGCGCACTCGGGAAGAATTGCGGTCTGGGAAAACCCTCTATCGCTCCATCGAATCCGGATTTTATCGC
GCCTTCACTAGTATTCTCGATAGCAACGTCACCACGCTGATTGCCTGTGGCGTGCTGTATTGGTTGGGGTCGGGACTGGT
GAGAGGATTTGCCGTCACCTTGGGCATTGGCGTTGCTGTCAGTATGTTTACAGCCATTACCTGCAGCCGCACCCTGATGT
TTACCGCCATTAGCCTTCCCAACCTCCGAAAAATTGAACTATTTGATTCTAAAAGGGCAGTCTCATGA

Upstream 100 bases:

>100_bases
CTAACGATTGTGCAGCCGCCTCAAATTGTGGAAGCGGTTCAGCAGATTACGGCTCTTCAGGTCTAAATTCCATTTTTACT
TTTTCCTTTGGAGCAGTGTG

Downstream 100 bases:

>100_bases
AGTTGAATCTGAATCAGCAACGGGGACTCTGGTGGACCATCTCCGCAGCTTTGATCCTAGCGGGGGTTATTTCCATGGCT
CTGTCCTGGAATCAATATCA

Product: protein-export membrane protein SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MLKQQRFLLALIALLVVGALIVVTPFGKQYGLGKINLGLDLRGGSQLTLQVNPTEEVKDITPNVMEAVQTVVANRLNPEG
VSEIVVQTVGSQQILVQLPGVSDPKDAEQLLSQVAQLDFRRPNNAILAQVNVRSSELQRLLQKLPEAEKAGDAAALAKLQ
GEVQQKQKQLTELQDQFFVKTDLTGEDLNDAGYAISQSQPNKWDVTLRFDVDGGKKFAALTKSLAGTGQPLGIFLDGKSI
SQATVSDRFKANGITGGAAIITGNFELEDAKLLANQLKGGSLPVPVKVEEIRTVGATLGQDSIRQSVYAGIGGLILVLIF
MGVWYRLPGLIADVALCVYGLLTFACYVLFGVTLTLPGIAGFILSIGMAVDANILIFERTREELRSGKTLYRSIESGFYR
AFTSILDSNVTTLIACGVLYWLGSGLVRGFAVTLGIGVAVSMFTAITCSRTLMFTAISLPNLRKIELFDSKRAVS

Sequences:

>Translated_475_residues
MLKQQRFLLALIALLVVGALIVVTPFGKQYGLGKINLGLDLRGGSQLTLQVNPTEEVKDITPNVMEAVQTVVANRLNPEG
VSEIVVQTVGSQQILVQLPGVSDPKDAEQLLSQVAQLDFRRPNNAILAQVNVRSSELQRLLQKLPEAEKAGDAAALAKLQ
GEVQQKQKQLTELQDQFFVKTDLTGEDLNDAGYAISQSQPNKWDVTLRFDVDGGKKFAALTKSLAGTGQPLGIFLDGKSI
SQATVSDRFKANGITGGAAIITGNFELEDAKLLANQLKGGSLPVPVKVEEIRTVGATLGQDSIRQSVYAGIGGLILVLIF
MGVWYRLPGLIADVALCVYGLLTFACYVLFGVTLTLPGIAGFILSIGMAVDANILIFERTREELRSGKTLYRSIESGFYR
AFTSILDSNVTTLIACGVLYWLGSGLVRGFAVTLGIGVAVSMFTAITCSRTLMFTAISLPNLRKIELFDSKRAVS
>Mature_475_residues
MLKQQRFLLALIALLVVGALIVVTPFGKQYGLGKINLGLDLRGGSQLTLQVNPTEEVKDITPNVMEAVQTVVANRLNPEG
VSEIVVQTVGSQQILVQLPGVSDPKDAEQLLSQVAQLDFRRPNNAILAQVNVRSSELQRLLQKLPEAEKAGDAAALAKLQ
GEVQQKQKQLTELQDQFFVKTDLTGEDLNDAGYAISQSQPNKWDVTLRFDVDGGKKFAALTKSLAGTGQPLGIFLDGKSI
SQATVSDRFKANGITGGAAIITGNFELEDAKLLANQLKGGSLPVPVKVEEIRTVGATLGQDSIRQSVYAGIGGLILVLIF
MGVWYRLPGLIADVALCVYGLLTFACYVLFGVTLTLPGIAGFILSIGMAVDANILIFERTREELRSGKTLYRSIESGFYR
AFTSILDSNVTTLIACGVLYWLGSGLVRGFAVTLGIGVAVSMFTAITCSRTLMFTAISLPNLRKIELFDSKRAVS

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=399, Percent_Identity=35.0877192982456, Blast_Score=209, Evalue=2e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 51068; Mature: 51068

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKQQRFLLALIALLVVGALIVVTPFGKQYGLGKINLGLDLRGGSQLTLQVNPTEEVKDI
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCHHHHHC
TPNVMEAVQTVVANRLNPEGVSEIVVQTVGSQQILVQLPGVSDPKDAEQLLSQVAQLDFR
CHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC
RPNNAILAQVNVRSSELQRLLQKLPEAEKAGDAAALAKLQGEVQQKQKQLTELQDQFFVK
CCCCCEEEEEECCHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEE
TDLTGEDLNDAGYAISQSQPNKWDVTLRFDVDGGKKFAALTKSLAGTGQPLGIFLDGKSI
ECCCCCCCCCCCCEECCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCC
SQATVSDRFKANGITGGAAIITGNFELEDAKLLANQLKGGSLPVPVKVEEIRTVGATLGQ
CHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHCCH
DSIRQSVYAGIGGLILVLIFMGVWYRLPGLIADVALCVYGLLTFACYVLFGVTLTLPGIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFILSIGMAVDANILIFERTREELRSGKTLYRSIESGFYRAFTSILDSNVTTLIACGVLY
HHHHHHHHHCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
WLGSGLVRGFAVTLGIGVAVSMFTAITCSRTLMFTAISLPNLRKIELFDSKRAVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MLKQQRFLLALIALLVVGALIVVTPFGKQYGLGKINLGLDLRGGSQLTLQVNPTEEVKDI
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCHHHHHC
TPNVMEAVQTVVANRLNPEGVSEIVVQTVGSQQILVQLPGVSDPKDAEQLLSQVAQLDFR
CHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC
RPNNAILAQVNVRSSELQRLLQKLPEAEKAGDAAALAKLQGEVQQKQKQLTELQDQFFVK
CCCCCEEEEEECCHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEE
TDLTGEDLNDAGYAISQSQPNKWDVTLRFDVDGGKKFAALTKSLAGTGQPLGIFLDGKSI
ECCCCCCCCCCCCEECCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCC
SQATVSDRFKANGITGGAAIITGNFELEDAKLLANQLKGGSLPVPVKVEEIRTVGATLGQ
CHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHCCH
DSIRQSVYAGIGGLILVLIFMGVWYRLPGLIADVALCVYGLLTFACYVLFGVTLTLPGIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFILSIGMAVDANILIFERTREELRSGKTLYRSIESGFYRAFTSILDSNVTTLIACGVLY
HHHHHHHHHCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
WLGSGLVRGFAVTLGIGVAVSMFTAITCSRTLMFTAISLPNLRKIELFDSKRAVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]