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The map label for this gene is opuCB [H]

Identifier: 158333856

GI number: 158333856

Start: 652404

End: 653033

Strand: Direct

Name: opuCB [H]

Synonym: AM1_0666

Alternate gene names: 158333856

Gene position: 652404-653033 (Clockwise)

Preceding gene: 158333855

Following gene: 158333857

Centisome position: 10.03

GC content: 49.37

Gene sequence:

>630_bases
ATGAGCTATATCCTCCAAAATCCGGATCTTGTATTGGAATTATTGCTGGAACATCTGCAAATGACGGGGATTGCTTTAGC
AGGGGCCGTGATCATTGCGGTCCCTATTGCCTGGATCATTTATCGGTGGACTTGGCTACAAGGACCCATTATGGCGGTAT
TGGGAGTGATTTATACCATTCCTAGCTTGGCCTTGATGATTTTGCTCATCCCGTTGCTGGGACTCAGTTCTATGACTGCC
ATTGTAGCCATGACCCTATATGCACAAGTCATATTGGTGCGAAGTATTTTGGTGGGGTTGCAGTCTATTCCGCAACCCAT
ATTGGAGGCAGCTCAAGGGATGGGTATGTCTGCTTGGCAATGTTGGTGGCAGGTGCAAGTTCCGTTAATGCGACCTGTCT
TTTTGGCGGGGGTTCGCTTAGCTACGACGGTTATGATTGCCCTAGGAACCATTGCAGCTAAATTTGGGGCAGGAGGATTG
GGCGTATTGCTGTTTGAGGGCATTGCTCAAGCGGGACGATATGACAAAATCTGGGCTGGGACAATTGTGGTGGGCCTGTT
AGCCGTCATCAGTAATGGTTTGTTGTGGCTGTGGGAGCAACAGTTGCAGCCTAAGTCTCCTCCAGCGTAG

Upstream 100 bases:

>100_bases
ATATTCAACGGATTAACTTGTTTGCCGATGGTGTCTGGACTTTGCTGAGCGGAATCTTAGGGGCCATTGGCTTACATGGT
TGGTTGAGCAACACAAAATC

Downstream 100 bases:

>100_bases
GTGGGCATTCTGTTCCCTGTATTGATAGGGTTGTGTAGGGGCGTCTGATATCCGGTCTTGTGAAAAACGCTAGTGGCGTT
GCCAAGAGATGGCTTACAAA

Product: binding-protein-dependent inner membrane transport system

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MSYILQNPDLVLELLLEHLQMTGIALAGAVIIAVPIAWIIYRWTWLQGPIMAVLGVIYTIPSLALMILLIPLLGLSSMTA
IVAMTLYAQVILVRSILVGLQSIPQPILEAAQGMGMSAWQCWWQVQVPLMRPVFLAGVRLATTVMIALGTIAAKFGAGGL
GVLLFEGIAQAGRYDKIWAGTIVVGLLAVISNGLLWLWEQQLQPKSPPA

Sequences:

>Translated_209_residues
MSYILQNPDLVLELLLEHLQMTGIALAGAVIIAVPIAWIIYRWTWLQGPIMAVLGVIYTIPSLALMILLIPLLGLSSMTA
IVAMTLYAQVILVRSILVGLQSIPQPILEAAQGMGMSAWQCWWQVQVPLMRPVFLAGVRLATTVMIALGTIAAKFGAGGL
GVLLFEGIAQAGRYDKIWAGTIVVGLLAVISNGLLWLWEQQLQPKSPPA
>Mature_208_residues
SYILQNPDLVLELLLEHLQMTGIALAGAVIIAVPIAWIIYRWTWLQGPIMAVLGVIYTIPSLALMILLIPLLGLSSMTAI
VAMTLYAQVILVRSILVGLQSIPQPILEAAQGMGMSAWQCWWQVQVPLMRPVFLAGVRLATTVMIALGTIAAKFGAGGLG
VLLFEGIAQAGRYDKIWAGTIVVGLLAVISNGLLWLWEQQLQPKSPPA

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788451, Length=211, Percent_Identity=37.914691943128, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788449, Length=192, Percent_Identity=31.7708333333333, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1789033, Length=126, Percent_Identity=27.7777777777778, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 22564; Mature: 22433

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYILQNPDLVLELLLEHLQMTGIALAGAVIIAVPIAWIIYRWTWLQGPIMAVLGVIYTI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
PSLALMILLIPLLGLSSMTAIVAMTLYAQVILVRSILVGLQSIPQPILEAAQGMGMSAWQ
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHH
CWWQVQVPLMRPVFLAGVRLATTVMIALGTIAAKFGAGGLGVLLFEGIAQAGRYDKIWAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHH
TIVVGLLAVISNGLLWLWEQQLQPKSPPA
HHHHHHHHHHHCCHHEEHHHHCCCCCCCC
>Mature Secondary Structure 
SYILQNPDLVLELLLEHLQMTGIALAGAVIIAVPIAWIIYRWTWLQGPIMAVLGVIYTI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
PSLALMILLIPLLGLSSMTAIVAMTLYAQVILVRSILVGLQSIPQPILEAAQGMGMSAWQ
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHH
CWWQVQVPLMRPVFLAGVRLATTVMIALGTIAAKFGAGGLGVLLFEGIAQAGRYDKIWAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHH
TIVVGLLAVISNGLLWLWEQQLQPKSPPA
HHHHHHHHHHHCCHHEEHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]