Click here to switch to the map view.

The map label for this gene is ppiA [C]

Identifier: 158333795

GI number: 158333795

Start: 593106

End: 594200

Strand: Direct

Name: ppiA [C]

Synonym: AM1_0603

Alternate gene names: 158333795

Gene position: 593106-594200 (Clockwise)

Preceding gene: 158333794

Following gene: 158333796

Centisome position: 9.12

GC content: 48.04

Gene sequence:

>1095_bases
ATGTATAGTCTTCATTCTTGGTTGAAAAGAACAGCCCTGCTGCTGCTCACCCTCGTATTCTCTCTTGGTCTGTCTGGCCC
AGCCTGGTCTGCACCGTTTCTGCCCCTATCGGTTTTGCCAACGGCAAATGCTGTGAAAGATGGCAGCAGTATTCTGCGCT
TTGCTTTACCCATTGATGAGCCCTATATCCGGGAAATTCAAAATGCCGTAGAGGGAACGACACCCCAAATTCGAGGTAAG
CGATGGCCTGAAATTCGCAAGGGATTGGGGAAAGCTAAACGAACCCTTGAGCGTCACCGTTCTGATATTTTGGCTGCGGT
TGCTCCAGACCAGCAGGCGGTTGCATCAGAGCAGTTGGATTTCATTGCTCAAGCATTGTTGGATTTAGAAGATGCTGTAG
CGGCCAAAGATATTGACCAATTCAATACGATTCGTAAGCCTCTAGCTGATCGAGTCGGCATTATTGAAGAGGCGATGCTT
ACAGAGTTTCCTTTTGAGGTGCCTGAAGAATACCAAGATCTGCCTCAATTAAAAGGTAGAGCCACGATTGCCATCACGAC
CAATAAAGGTGACATGACTGTGGTGGTAGATGGCTATAGTGCTCCTGTGACCGCAGGCAACTTTGTTGATCTAGTACAGC
GCAAATTTTACGATGGCCTGAAGTTTACGCGGGCTGAAGAATCCTATGTGGTTCAAACTGGCGATCCAGATGGCCCTGAT
GCTGGCTTTATTGATCCTGACACTGGAGAATACCGAGCTATCCCCCTAGAAATCATGGTTAAGGGGGATTCTGAGCCAAT
TTATGGATCTACTTTGGAGGATTTAGGAATTTACTTGGATGAGCCAGTATTGACCTTCTCTTCCTACGGCACGATGGCTA
TGGCTCGTCCAGGGGATGATGCTAACGGCGGTTCCTCCCAGTTCTTTTTCTTGCTCTTTGAGCCTGAACTAACCCCTGCT
GGATCCAATCTATTGGATGGTCGTTATGCGGTCTTTGGTTATGTGGTGGATGGTCAAGATGTTCTCGGTACGATTAAGCC
TGGCGATGTGATTGAGTCTGCTCGGGTGATTAAAGGGGCTGAGAATCTCGTCTAA

Upstream 100 bases:

>100_bases
TTGACTAGGTTTATGGATTGTTGATATAGAACAACAACTCTAGCCTCGTGGGGTGGCTCACGATCGAGCTGGCTTGATTT
AAGTTGCAATTTTAGGATCT

Downstream 100 bases:

>100_bases
ATTCACAAGCATCAACCACAATAGGCTTGGGAGCTGCTTCCAAGCCTTTTTTTGATCAGGGACAGATGGAAAAGAACAAC
TTAGGTGTCACTGTTGCCGA

Product: cyclophilin-type peptidyl-prolyl cis-trans isomerase

Products: NA

Alternate protein names: Putative thylakoid lumen PPIase; Putative thylakoid lumen rotamase [H]

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MYSLHSWLKRTALLLLTLVFSLGLSGPAWSAPFLPLSVLPTANAVKDGSSILRFALPIDEPYIREIQNAVEGTTPQIRGK
RWPEIRKGLGKAKRTLERHRSDILAAVAPDQQAVASEQLDFIAQALLDLEDAVAAKDIDQFNTIRKPLADRVGIIEEAML
TEFPFEVPEEYQDLPQLKGRATIAITTNKGDMTVVVDGYSAPVTAGNFVDLVQRKFYDGLKFTRAEESYVVQTGDPDGPD
AGFIDPDTGEYRAIPLEIMVKGDSEPIYGSTLEDLGIYLDEPVLTFSSYGTMAMARPGDDANGGSSQFFFLLFEPELTPA
GSNLLDGRYAVFGYVVDGQDVLGTIKPGDVIESARVIKGAENLV

Sequences:

>Translated_364_residues
MYSLHSWLKRTALLLLTLVFSLGLSGPAWSAPFLPLSVLPTANAVKDGSSILRFALPIDEPYIREIQNAVEGTTPQIRGK
RWPEIRKGLGKAKRTLERHRSDILAAVAPDQQAVASEQLDFIAQALLDLEDAVAAKDIDQFNTIRKPLADRVGIIEEAML
TEFPFEVPEEYQDLPQLKGRATIAITTNKGDMTVVVDGYSAPVTAGNFVDLVQRKFYDGLKFTRAEESYVVQTGDPDGPD
AGFIDPDTGEYRAIPLEIMVKGDSEPIYGSTLEDLGIYLDEPVLTFSSYGTMAMARPGDDANGGSSQFFFLLFEPELTPA
GSNLLDGRYAVFGYVVDGQDVLGTIKPGDVIESARVIKGAENLV
>Mature_364_residues
MYSLHSWLKRTALLLLTLVFSLGLSGPAWSAPFLPLSVLPTANAVKDGSSILRFALPIDEPYIREIQNAVEGTTPQIRGK
RWPEIRKGLGKAKRTLERHRSDILAAVAPDQQAVASEQLDFIAQALLDLEDAVAAKDIDQFNTIRKPLADRVGIIEEAML
TEFPFEVPEEYQDLPQLKGRATIAITTNKGDMTVVVDGYSAPVTAGNFVDLVQRKFYDGLKFTRAEESYVVQTGDPDGPD
AGFIDPDTGEYRAIPLEIMVKGDSEPIYGSTLEDLGIYLDEPVLTFSSYGTMAMARPGDDANGGSSQFFFLLFEPELTPA
GSNLLDGRYAVFGYVVDGQDVLGTIKPGDVIESARVIKGAENLV

Specific function: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Required for the assembly and stabilization of PSII [H]

COG id: COG0652

COG function: function code O; Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family

Gene ontology:

Cell location: Cellular thylakoid lumen (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase cyclophilin-type domain [H]

Homologues:

Organism=Homo sapiens, GI7706339, Length=157, Percent_Identity=31.2101910828025, Blast_Score=69, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015891
- InterPro:   IPR002130
- InterPro:   IPR023222 [H]

Pfam domain/function: PF00160 Pro_isomerase [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 39708; Mature: 39708

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: PS50072 CSA_PPIASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSLHSWLKRTALLLLTLVFSLGLSGPAWSAPFLPLSVLPTANAVKDGSSILRFALPIDE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHCCCCCEEEEECCCCC
PYIREIQNAVEGTTPQIRGKRWPEIRKGLGKAKRTLERHRSDILAAVAPDQQAVASEQLD
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHH
FIAQALLDLEDAVAAKDIDQFNTIRKPLADRVGIIEEAMLTEFPFEVPEEYQDLPQLKGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
ATIAITTNKGDMTVVVDGYSAPVTAGNFVDLVQRKFYDGLKFTRAEESYVVQTGDPDGPD
EEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCCCEEEECCCCCCCC
AGFIDPDTGEYRAIPLEIMVKGDSEPIYGSTLEDLGIYLDEPVLTFSSYGTMAMARPGDD
CCCCCCCCCCEEEEEEEEEEECCCCCCCCCCHHHCCCEECCCEEEECCCCCEEEECCCCC
ANGGSSQFFFLLFEPELTPAGSNLLDGRYAVFGYVVDGQDVLGTIKPGDVIESARVIKGA
CCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCHHHEEECCCCHHHHHHHHHCCH
ENLV
HCCC
>Mature Secondary Structure
MYSLHSWLKRTALLLLTLVFSLGLSGPAWSAPFLPLSVLPTANAVKDGSSILRFALPIDE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHCCCCCEEEEECCCCC
PYIREIQNAVEGTTPQIRGKRWPEIRKGLGKAKRTLERHRSDILAAVAPDQQAVASEQLD
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHH
FIAQALLDLEDAVAAKDIDQFNTIRKPLADRVGIIEEAMLTEFPFEVPEEYQDLPQLKGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
ATIAITTNKGDMTVVVDGYSAPVTAGNFVDLVQRKFYDGLKFTRAEESYVVQTGDPDGPD
EEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCCCEEEECCCCCCCC
AGFIDPDTGEYRAIPLEIMVKGDSEPIYGSTLEDLGIYLDEPVLTFSSYGTMAMARPGDD
CCCCCCCCCCEEEEEEEEEEECCCCCCCCCCHHHCCCEECCCEEEECCCCCEEEECCCCC
ANGGSSQFFFLLFEPELTPAGSNLLDGRYAVFGYVVDGQDVLGTIKPGDVIESARVIKGA
CCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCHHHEEECCCCHHHHHHHHHCCH
ENLV
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]