Click here to switch to the map view.

The map label for this gene is ydeS [H]

Identifier: 158333765

GI number: 158333765

Start: 559735

End: 560322

Strand: Direct

Name: ydeS [H]

Synonym: AM1_0573

Alternate gene names: 158333765

Gene position: 559735-560322 (Clockwise)

Preceding gene: 158333762

Following gene: 158333770

Centisome position: 8.61

GC content: 47.62

Gene sequence:

>588_bases
ATGAAAGATGCCTACAAAAAGTCGCCGGGGAGACCGCGCAGTGTTTCGTCTCAACGGGCCATGTTGAAAGCCACGCTGGA
ACTACTGGCCGAAGTAGGTTTTGAGAAGATGAGCATGGATGCGATCGCAACACGCGCAGGAATAGGCAAGACAACCATCT
ATCGGCGATATGCCAATAAAGATGAACTTGTTGCTGATGCCATCGAAAGTGTGCGGGAAGAAATACGCGTTCCCGATACA
GGGAATCTTTGGGGGGATATGGATGCCTTAATCGAAAATGCAACACAAATAACCCTGACCCCACTCGGGAAGCAAGCTGT
TGCCATGATTATTAGTAGTGCATCTAGTAATGCTAAGTTCGCGCGAGTTTACTGGGAAAAATATCTTCTACCTCGAAAAC
AAGCTTTCGCCAGCGTTATTGAACGGGCAAAAGTAAGACAGGAAGTTGCAAGTGATGTGGATGCAGGTTTAGTGTTCGAC
ACGATGAGCGGCATTATGCTCTATGCATTAATCTTTCCACCGGAAGAAGCTTGGACGGACTATATCCGCCGTTCACTCAG
CTTGGTACTCAGACCTATGCCGAAATAG

Upstream 100 bases:

>100_bases
CCCTTCTCTCAGGGTTTGAGTACTTTTTTTATCCATATACAGGGGTTGTTGACTCATTTAATTACGATACGTATCTGTAT
CGTAATTCATAATAGCATCT

Downstream 100 bases:

>100_bases
TCCCATTTTTAGAATACTTCTGATTGAAGTGCTCAGGTGTCAGCCTTGGTGAGAGTTAGGAGTTCAGCATCTCTTGAGCT
GAGATGAATGGATGAACCGA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MKDAYKKSPGRPRSVSSQRAMLKATLELLAEVGFEKMSMDAIATRAGIGKTTIYRRYANKDELVADAIESVREEIRVPDT
GNLWGDMDALIENATQITLTPLGKQAVAMIISSASSNAKFARVYWEKYLLPRKQAFASVIERAKVRQEVASDVDAGLVFD
TMSGIMLYALIFPPEEAWTDYIRRSLSLVLRPMPK

Sequences:

>Translated_195_residues
MKDAYKKSPGRPRSVSSQRAMLKATLELLAEVGFEKMSMDAIATRAGIGKTTIYRRYANKDELVADAIESVREEIRVPDT
GNLWGDMDALIENATQITLTPLGKQAVAMIISSASSNAKFARVYWEKYLLPRKQAFASVIERAKVRQEVASDVDAGLVFD
TMSGIMLYALIFPPEEAWTDYIRRSLSLVLRPMPK
>Mature_195_residues
MKDAYKKSPGRPRSVSSQRAMLKATLELLAEVGFEKMSMDAIATRAGIGKTTIYRRYANKDELVADAIESVREEIRVPDT
GNLWGDMDALIENATQITLTPLGKQAVAMIISSASSNAKFARVYWEKYLLPRKQAFASVIERAKVRQEVASDVDAGLVFD
TMSGIMLYALIFPPEEAWTDYIRRSLSLVLRPMPK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21781; Mature: 21781

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDAYKKSPGRPRSVSSQRAMLKATLELLAEVGFEKMSMDAIATRAGIGKTTIYRRYANK
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHCCH
DELVADAIESVREEIRVPDTGNLWGDMDALIENATQITLTPLGKQAVAMIISSASSNAKF
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCHH
ARVYWEKYLLPRKQAFASVIERAKVRQEVASDVDAGLVFDTMSGIMLYALIFPPEEAWTD
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
YIRRSLSLVLRPMPK
HHHHHHHHHHCCCCC
>Mature Secondary Structure
MKDAYKKSPGRPRSVSSQRAMLKATLELLAEVGFEKMSMDAIATRAGIGKTTIYRRYANK
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHCCH
DELVADAIESVREEIRVPDTGNLWGDMDALIENATQITLTPLGKQAVAMIISSASSNAKF
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCHH
ARVYWEKYLLPRKQAFASVIERAKVRQEVASDVDAGLVFDTMSGIMLYALIFPPEEAWTD
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
YIRRSLSLVLRPMPK
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]