Click here to switch to the map view.

The map label for this gene is petC2 [H]

Identifier: 158333648

GI number: 158333648

Start: 430261

End: 431292

Strand: Reverse

Name: petC2 [H]

Synonym: AM1_0450

Alternate gene names: 158333648

Gene position: 431292-430261 (Counterclockwise)

Preceding gene: 158333649

Following gene: 158333647

Centisome position: 6.63

GC content: 54.26

Gene sequence:

>1032_bases
ATGAACGAGAGTTTATCTATTTCTCAGCCCTCTCTCTCCCGGCGACGGTTTCTCAATTTCTTGACCGGGTCGGCGGTAGC
CATCACGGCAGGTGCAACCCTCTATCCCATCAGTCGTGTTTTTGTACCCCCAAACTCCAGCAGAGGGGCGGGGCGGGTTC
TAGCAAAGGATGCCCTGGGCAACCCCATCCCCACTAGTCAACTCTTGGCAGAACCGCCTGGCACTCGTGCCCTCGTGGCA
GGACTAGATAGTGAACCGACCTATTTAACCCTGACGATCACAGGTCAAATTGAGGATCGGGGCATCGTCGATAACTGCAC
CCATTTAGGCTGCACATTTCCCTGGAATGGTGCTGCCGATCAATTTCAATGTCCTTGCCACGGATCTCGCTTTGCAGCCG
ATGGTTCCGTGGTGCGCGGTCCTGCCGATCGACCCCTCAAGTTGGTGCATGTCCAAGTTGAAGGTGAACAAATCTGGATT
CTGCCTTGGACCGAGCTTGACCCACGCACCGGGGACCGCCCCTGGTGGGTCAAGGCGGATACCTTTGATGACCACCCTAC
ACCGGAAAATCTCATGCAATATACCCTTCAAATCAATGAGCAGCTCTCCGTCGCTATGCTCCAGCCAACCCCTGACCAGA
TTCAAGATGCGGCCCAACTGGGGTTTAAGTCTGTATTGAATTTGAGATCGCCTCAGGAAGACGGCTTTCTCATCAATGAG
TCCCAACTTGTGCACAGCGCAGGCATGAACTATGCCAATCTACCCATTAATCCAGCAGACCTCTCAGAGGCCACGGCTGA
ACAAGTGTTGACGATCATAGATCAGCTATCCAAACCCATTCTCTTGCATTGCAAAGGAGGGTTACGCTCTGGTGCGATGG
CATTGCTCTACGAAGCCGTTCATCAGCAATGGACCACAGACCAGCTATTGGCCCAAGTTCACAAACTGGACCTGCCCCTA
GCCGCACACCCCCAACTGCTGCACTTTATCCAAGACTACGTTGACGCCCAACCCCTCGGCACCGTGGCCTAG

Upstream 100 bases:

>100_bases
CTTACTGGGGTTCTGTCCGATTTATCGATTGTTGGGGATTCACACTAATGCTCGTCAACTTTCCCAATAACTCTACCCAC
CCTCAGCTCGGAGAATCTCT

Downstream 100 bases:

>100_bases
CGCCATCACCACTGACCATTCATTTCTCACCCCAATTCTATTTCTACGACTATGTATAACTATCATTCACACCGCGCTTC
GGTGACTCAGGTTTCGCCGT

Product: Rieske iron-sulfur (cyt b6f) fusion protein

Products: NA

Alternate protein names: Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein; ISP; RISP; Rieske iron-sulfur protein [H]

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MNESLSISQPSLSRRRFLNFLTGSAVAITAGATLYPISRVFVPPNSSRGAGRVLAKDALGNPIPTSQLLAEPPGTRALVA
GLDSEPTYLTLTITGQIEDRGIVDNCTHLGCTFPWNGAADQFQCPCHGSRFAADGSVVRGPADRPLKLVHVQVEGEQIWI
LPWTELDPRTGDRPWWVKADTFDDHPTPENLMQYTLQINEQLSVAMLQPTPDQIQDAAQLGFKSVLNLRSPQEDGFLINE
SQLVHSAGMNYANLPINPADLSEATAEQVLTIIDQLSKPILLHCKGGLRSGAMALLYEAVHQQWTTDQLLAQVHKLDLPL
AAHPQLLHFIQDYVDAQPLGTVA

Sequences:

>Translated_343_residues
MNESLSISQPSLSRRRFLNFLTGSAVAITAGATLYPISRVFVPPNSSRGAGRVLAKDALGNPIPTSQLLAEPPGTRALVA
GLDSEPTYLTLTITGQIEDRGIVDNCTHLGCTFPWNGAADQFQCPCHGSRFAADGSVVRGPADRPLKLVHVQVEGEQIWI
LPWTELDPRTGDRPWWVKADTFDDHPTPENLMQYTLQINEQLSVAMLQPTPDQIQDAAQLGFKSVLNLRSPQEDGFLINE
SQLVHSAGMNYANLPINPADLSEATAEQVLTIIDQLSKPILLHCKGGLRSGAMALLYEAVHQQWTTDQLLAQVHKLDLPL
AAHPQLLHFIQDYVDAQPLGTVA
>Mature_343_residues
MNESLSISQPSLSRRRFLNFLTGSAVAITAGATLYPISRVFVPPNSSRGAGRVLAKDALGNPIPTSQLLAEPPGTRALVA
GLDSEPTYLTLTITGQIEDRGIVDNCTHLGCTFPWNGAADQFQCPCHGSRFAADGSVVRGPADRPLKLVHVQVEGEQIWI
LPWTELDPRTGDRPWWVKADTFDDHPTPENLMQYTLQINEQLSVAMLQPTPDQIQDAAQLGFKSVLNLRSPQEDGFLINE
SQLVHSAGMNYANLPINPADLSEATAEQVLTIIDQLSKPILLHCKGGLRSGAMALLYEAVHQQWTTDQLLAQVHKLDLPL
AAHPQLLHFIQDYVDAQPLGTVA

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions [H]

COG id: COG0723

COG function: function code C; Rieske Fe-S protein

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein. Note=The transmembrane helix obliquely spans the membrane in one monomer, and its extrinsic C- terminal domain is part of the other monomer (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014909
- InterPro:   IPR017941
- InterPro:   IPR014349
- InterPro:   IPR005805
- InterPro:   IPR006311 [H]

Pfam domain/function: PF08802 CytB6-F_Fe-S; PF00355 Rieske [H]

EC number: =1.10.99.1 [H]

Molecular weight: Translated: 37428; Mature: 37428

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS00199 RIESKE_1 ; PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNESLSISQPSLSRRRFLNFLTGSAVAITAGATLYPISRVFVPPNSSRGAGRVLAKDALG
CCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCEEEEEEEEEECCCCCCCCCCEEEHHHCC
NPIPTSQLLAEPPGTRALVAGLDSEPTYLTLTITGQIEDRGIVDNCTHLGCTFPWNGAAD
CCCCCHHHHCCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
QFQCPCHGSRFAADGSVVRGPADRPLKLVHVQVEGEQIWILPWTELDPRTGDRPWWVKAD
CEECCCCCCEEECCCCEEECCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEECC
TFDDHPTPENLMQYTLQINEQLSVAMLQPTPDQIQDAAQLGFKSVLNLRSPQEDGFLINE
CCCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECH
SQLVHSAGMNYANLPINPADLSEATAEQVLTIIDQLSKPILLHCKGGLRSGAMALLYEAV
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
HQQWTTDQLLAQVHKLDLPLAAHPQLLHFIQDYVDAQPLGTVA
HHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNESLSISQPSLSRRRFLNFLTGSAVAITAGATLYPISRVFVPPNSSRGAGRVLAKDALG
CCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCEEEEEEEEEECCCCCCCCCCEEEHHHCC
NPIPTSQLLAEPPGTRALVAGLDSEPTYLTLTITGQIEDRGIVDNCTHLGCTFPWNGAAD
CCCCCHHHHCCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
QFQCPCHGSRFAADGSVVRGPADRPLKLVHVQVEGEQIWILPWTELDPRTGDRPWWVKAD
CEECCCCCCEEECCCCEEECCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEECC
TFDDHPTPENLMQYTLQINEQLSVAMLQPTPDQIQDAAQLGFKSVLNLRSPQEDGFLINE
CCCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECH
SQLVHSAGMNYANLPINPADLSEATAEQVLTIIDQLSKPILLHCKGGLRSGAMALLYEAV
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
HQQWTTDQLLAQVHKLDLPLAAHPQLLHFIQDYVDAQPLGTVA
HHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA