Click here to switch to the map view.

The map label for this gene is rlpA [C]

Identifier: 158333628

GI number: 158333628

Start: 403479

End: 404486

Strand: Reverse

Name: rlpA [C]

Synonym: AM1_0429

Alternate gene names: 158333628

Gene position: 404486-403479 (Counterclockwise)

Preceding gene: 158333630

Following gene: 158333625

Centisome position: 6.22

GC content: 50.0

Gene sequence:

>1008_bases
ATGAGAAATAAACTGGTTTTAACTGGCCTAGCTGCCGCACTCACGGTATCCGTTGTGAGCGCACTGAGTACGAGTGAGGC
CAATCAAACCCTAGAAGTAGAAAAGTCTGCTCCAGAGACAGTCCGTGAGCAAGATGCATCAATTGAAGCCTCGGATGAGG
CCGATGCGTCTGAAGAGGCTCAAGATGCTGATGCGGTTAAGGTCGGAGACAGTCAACCTAAGGGCGCGGTTAGTGACAAG
CCTGCGATCGCAAAGATTCACGCCTATGAAAAATCGGGTCGACCGGCCGCTACCTTGTATGTGCGTAATATCCCCGTCGT
TACGTTTCTAGGGACAGAAAAGTCTGCTGAAACAGAGAAAGTCGCTACAACTAAATCAGAAACCGCTCAACCTGAAGCGA
ATCAGCAAGATCCGGTCTGGCGGGCCACAACCGTTGCCGCCAAGATTAATCAGTTGGATCGAGATGGGGTTGATGCCAAT
AACATTAAGGTCATTTGGGATAAAGAACGCGAGAGCTATGTAATTAAGACTAGCGACGCCCACATCCTGGAAATGAGCGA
GCTAACGATACTCCCCAAAACTACCAAGGATATGGGAGATGACGCCCTGAAGATTACGAATCTACTGCGTCGTCAAATGG
GGACTACTGTGGCGCTAAAAGACATTCCCGGTCGCCCTAAGCCTCCTGCTCCTGCCGTTGCCGCAACATCTGTCCGGTAT
CAGGTCAATGGCGAAGCCTCTTGGTATGGCCCAGGCTTTCATGGTAACTACACTGCCAATGGTGAAGTTTATAATCAGTA
CGCATTGACCGCAGCTCATAAAACCTTGCCCTTTGGGACCCGAGTCAGAGTCACCAATCTGTATAACGGACGTTCTGTGG
TTGTACGAATCAATGACCGTGGACCGTTTATCCCTGGACGCATCATTGATTTATCCCAAGGTGCTGCTCAACTGATTGGT
GTGACCAGTAGTGGTGTCGCTCCCGTACAGATGGATATTCTGCAATAG

Upstream 100 bases:

>100_bases
GGTTGAATCCTGTAAAGGTTAATAGAGTCTCCACCGTACTTTGTGTTAAGGAAGACTGTTTTCAATCTTGTCCTTCTATA
CTCTCCAGGCAAGAGCATTC

Downstream 100 bases:

>100_bases
TTAAGCGTTAGCTTTCAGCTTAAAAAAGCAGCTCCAAATCTGGGGCTGCTTTTTTAAGCTGAATTGCTAGAAAATCAGGA
TGAGAAGATCTTCTAGCCTA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MRNKLVLTGLAAALTVSVVSALSTSEANQTLEVEKSAPETVREQDASIEASDEADASEEAQDADAVKVGDSQPKGAVSDK
PAIAKIHAYEKSGRPAATLYVRNIPVVTFLGTEKSAETEKVATTKSETAQPEANQQDPVWRATTVAAKINQLDRDGVDAN
NIKVIWDKERESYVIKTSDAHILEMSELTILPKTTKDMGDDALKITNLLRRQMGTTVALKDIPGRPKPPAPAVAATSVRY
QVNGEASWYGPGFHGNYTANGEVYNQYALTAAHKTLPFGTRVRVTNLYNGRSVVVRINDRGPFIPGRIIDLSQGAAQLIG
VTSSGVAPVQMDILQ

Sequences:

>Translated_335_residues
MRNKLVLTGLAAALTVSVVSALSTSEANQTLEVEKSAPETVREQDASIEASDEADASEEAQDADAVKVGDSQPKGAVSDK
PAIAKIHAYEKSGRPAATLYVRNIPVVTFLGTEKSAETEKVATTKSETAQPEANQQDPVWRATTVAAKINQLDRDGVDAN
NIKVIWDKERESYVIKTSDAHILEMSELTILPKTTKDMGDDALKITNLLRRQMGTTVALKDIPGRPKPPAPAVAATSVRY
QVNGEASWYGPGFHGNYTANGEVYNQYALTAAHKTLPFGTRVRVTNLYNGRSVVVRINDRGPFIPGRIIDLSQGAAQLIG
VTSSGVAPVQMDILQ
>Mature_335_residues
MRNKLVLTGLAAALTVSVVSALSTSEANQTLEVEKSAPETVREQDASIEASDEADASEEAQDADAVKVGDSQPKGAVSDK
PAIAKIHAYEKSGRPAATLYVRNIPVVTFLGTEKSAETEKVATTKSETAQPEANQQDPVWRATTVAAKINQLDRDGVDAN
NIKVIWDKERESYVIKTSDAHILEMSELTILPKTTKDMGDDALKITNLLRRQMGTTVALKDIPGRPKPPAPAVAATSVRY
QVNGEASWYGPGFHGNYTANGEVYNQYALTAAHKTLPFGTRVRVTNLYNGRSVVVRINDRGPFIPGRIIDLSQGAAQLIG
VTSSGVAPVQMDILQ

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=78, Percent_Identity=50, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 35982; Mature: 35982

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNKLVLTGLAAALTVSVVSALSTSEANQTLEVEKSAPETVREQDASIEASDEADASEEA
CCCCEEEHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHCCCEECCCCCCCCHHH
QDADAVKVGDSQPKGAVSDKPAIAKIHAYEKSGRPAATLYVRNIPVVTFLGTEKSAETEK
CCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCEEEEECCCCCCCCHH
VATTKSETAQPEANQQDPVWRATTVAAKINQLDRDGVDANNIKVIWDKERESYVIKTSDA
HCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEECCC
HILEMSELTILPKTTKDMGDDALKITNLLRRQMGTTVALKDIPGRPKPPAPAVAATSVRY
EEEEEEEEEEECCCCHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCEEEEEEEE
QVNGEASWYGPGFHGNYTANGEVYNQYALTAAHKTLPFGTRVRVTNLYNGRSVVVRINDR
EECCCEEEECCCCCCCEECCCCEEEEEEEEEHHHCCCCCCEEEEEEEECCCEEEEEECCC
GPFIPGRIIDLSQGAAQLIGVTSSGVAPVQMDILQ
CCCCCCEEEECCCCCEEEEEECCCCCCEEEEEECC
>Mature Secondary Structure
MRNKLVLTGLAAALTVSVVSALSTSEANQTLEVEKSAPETVREQDASIEASDEADASEEA
CCCCEEEHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHCCCEECCCCCCCCHHH
QDADAVKVGDSQPKGAVSDKPAIAKIHAYEKSGRPAATLYVRNIPVVTFLGTEKSAETEK
CCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCEEEEECCCCCCCCHH
VATTKSETAQPEANQQDPVWRATTVAAKINQLDRDGVDANNIKVIWDKERESYVIKTSDA
HCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEECCC
HILEMSELTILPKTTKDMGDDALKITNLLRRQMGTTVALKDIPGRPKPPAPAVAATSVRY
EEEEEEEEEEECCCCHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCEEEEEEEE
QVNGEASWYGPGFHGNYTANGEVYNQYALTAAHKTLPFGTRVRVTNLYNGRSVVVRINDR
EECCCEEEECCCCCCCEECCCCEEEEEEEEEHHHCCCCCCEEEEEEEECCCEEEEEECCC
GPFIPGRIIDLSQGAAQLIGVTSSGVAPVQMDILQ
CCCCCCEEEECCCCCEEEEEECCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]