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The map label for this gene is ydcC [C]

Identifier: 158333354

GI number: 158333354

Start: 126563

End: 127000

Strand: Reverse

Name: ydcC [C]

Synonym: AM1_0124

Alternate gene names: 158333354

Gene position: 127000-126563 (Counterclockwise)

Preceding gene: 158333355

Following gene: 158333350

Centisome position: 1.95

GC content: 48.4

Gene sequence:

>438_bases
ATGGCTGAGCATACCCACTCCATACAGAGTAGAGGACGAGAGGAACATCGGTGTATCCAGGTTTATGAGCCTGTCGGCAT
AGCCCTACAAGAGTGGGAAGCCATTCGCTCGGTGCTTTGTGTCCAGCGATGGGGTACTCGTCAAGGCAAGGCGTATCACA
ACACGGCCTATTACATCAGTTCAGCTGCCACCTCACCCCATCATTGGCAATCTCTGGTCCGAGAGCATTGGGGCATTGAA
AATCGGTTGCATTGGCCGAAGGATGTGGTCTTTGGTGAAGATGATTATCGACTAGAGGATGAACAAGCACTGCTCAATTG
GTCAGTGCTTAGAACCATTGTGATTAATATTCTGCGTCTAAACGGCTATCAATCCCTCAAAACCGCTATGACTAAGCTTG
CTAATCGGGTCGACATCATTTTTTCGCTGCTAACTTAA

Upstream 100 bases:

>100_bases
GCAAGTTGTGGCTTCGGTTAATGACTATCTTATCGCCGTTAAGCGCAATCAGGGCCGTCTTTACGACCACCTCCAGACTT
ACTTTGAGTGTCTTAAACCC

Downstream 100 bases:

>100_bases
AACAGCCCTGCTATGGTATCTACAATTGGAGAATCCTCAAGTTTGGTTTTGACTTGATGCAATAGTTTCATAAACATCCT
TTGGGTTCGCCACCCAGCTA

Product: transposase

Products: NA

Alternate protein names: Transposase; IS4 Family Transposase; H Repeat-Containing Protein; Transposase Is4 Family; ISPg6 Transposase

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MAEHTHSIQSRGREEHRCIQVYEPVGIALQEWEAIRSVLCVQRWGTRQGKAYHNTAYYISSAATSPHHWQSLVREHWGIE
NRLHWPKDVVFGEDDYRLEDEQALLNWSVLRTIVINILRLNGYQSLKTAMTKLANRVDIIFSLLT

Sequences:

>Translated_145_residues
MAEHTHSIQSRGREEHRCIQVYEPVGIALQEWEAIRSVLCVQRWGTRQGKAYHNTAYYISSAATSPHHWQSLVREHWGIE
NRLHWPKDVVFGEDDYRLEDEQALLNWSVLRTIVINILRLNGYQSLKTAMTKLANRVDIIFSLLT
>Mature_144_residues
AEHTHSIQSRGREEHRCIQVYEPVGIALQEWEAIRSVLCVQRWGTRQGKAYHNTAYYISSAATSPHHWQSLVREHWGIEN
RLHWPKDVVFGEDDYRLEDEQALLNWSVLRTIVINILRLNGYQSLKTAMTKLANRVDIIFSLLT

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787733, Length=150, Percent_Identity=34.6666666666667, Blast_Score=63, Evalue=9e-12,
Organism=Escherichia coli, GI1789896, Length=121, Percent_Identity=37.1900826446281, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16968; Mature: 16837

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEHTHSIQSRGREEHRCIQVYEPVGIALQEWEAIRSVLCVQRWGTRQGKAYHNTAYYIS
CCCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHEEEE
SAATSPHHWQSLVREHWGIENRLHWPKDVVFGEDDYRLEDEQALLNWSVLRTIVINILRL
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHC
NGYQSLKTAMTKLANRVDIIFSLLT
CCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AEHTHSIQSRGREEHRCIQVYEPVGIALQEWEAIRSVLCVQRWGTRQGKAYHNTAYYIS
CCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHEEEE
SAATSPHHWQSLVREHWGIENRLHWPKDVVFGEDDYRLEDEQALLNWSVLRTIVINILRL
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHC
NGYQSLKTAMTKLANRVDIIFSLLT
CCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA