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The map label for this gene is rpoE

Identifier: 158333348

GI number: 158333348

Start: 123317

End: 124237

Strand: Direct

Name: rpoE

Synonym: AM1_0119

Alternate gene names: NA

Gene position: 123317-124237 (Clockwise)

Preceding gene: 158333347

Following gene: 158333349

Centisome position: 1.9

GC content: 49.08

Gene sequence:

>921_bases
ATGGGCACTCAACCCTCGGCAGCCTCTCATCCCTTAACGGATGATTTTTTGGAGTATCGGTCGCTTTTGTTTGCGATCGC
ATATCGGATGCTGGGTACCGTTATGGATGCGGAGGACATGGTGCAGGATACCTTCCTCAAATGGCAGACCGTCTCAAAAT
CCCAGGTGCGGTCTGCCAAAAGCTATCTGACCACCATCATTACTCGGCTGTGTATCGACCGATTGCGATCCGCTCAAGTC
CAGCGCGAGCAATATATTGGCCCTTGGCTACCGGAGCCGATTGTCTCTGATCTCTCAGCCGATCCCAATCATCGAGTGGA
ACTAGCTGACTCCCTAACAATGGCCTTTTTGGTCATGCTGGAACGACTCTCTCCCATTGAGAGGGCCGTTTTTCTATTAA
GGGAGATCTTTGACTATGACTACGACGACATTGCACCCATTGTTGATAAGAGTACGGTGAACTGTCGCCAAATTGCTCGC
CGTGCTCGGCAACAGGTAACCAAACCGCGATCGCGATTTCCGTCTTCCCCTGAACAGCATCAACAACTCACCTTAAAATT
TATGCAGGCCTGCCAGCAGGGAGAGATGGAGGATTTACTTCAATATCTGGCTGATGATATTACCCTCTGGTCGGATGGCG
GGGGTCAAGTTACCGCAGCCCTTAAGCCCATTCAGGGCTCAGCAAAAGTGAGTGGTTTCCTCCGAGCTATCTATCGGTAT
CAGAGCAAATTGGGGTTCACTCCAGATCTAGAACTAGTCCAGGTCAATGGCCAGACTGGCATTCAGTTCTCCATCTCAGG
CCAAGTAGAAACGATTGCTGTTTTAGAAACGACAGGGCAACAAATCATATCGATCTTTTTTATCAGAAATCCCCAAAAAT
TGAAGATAGAGCAAACTCATCCTTCCAGCATCTTGGATTGA

Upstream 100 bases:

>100_bases
ATCATTTTTCTCAGATGCCTCCCACGAGTTTGGGAGTTCTATTTCAGGTCACGGCAATTCTACTGGCCGTCTCGGAAGGC
ATTGGTATTGGAGTTAGTGT

Downstream 100 bases:

>100_bases
GAAAAATCTAAGTTCTCCCATTCAAATCTCAATCATGATGCACTTATAATTCATGATGTCTTTTTCTACTAATGGGTAAT
ATACTCTATAAGATCATTAC

Product: RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma Factor; RNA Polymerase Sigma Factor SigJ; RNA Polymerase ECF-Subfamily Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF-Sigma Factor; RNA Polymerase Sigma Factor; ECF Family RNA Polymerase Sigma Factor; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; Sigma Factor Sigma; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase; RNA Polymerase Sigma Factor Sigma-70 Family; ECF-Family Protein RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; ECF Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-70-Like Factor; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; RNA Polymerase Sigma-24 Factor Protein; RNA Polymerase Sigma Subunit ECF Family; ECF Subfamily RNA Polymerase Sigma-; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase Sigma-70 Factor Protein; Sigma-70 Factor

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MGTQPSAASHPLTDDFLEYRSLLFAIAYRMLGTVMDAEDMVQDTFLKWQTVSKSQVRSAKSYLTTIITRLCIDRLRSAQV
QREQYIGPWLPEPIVSDLSADPNHRVELADSLTMAFLVMLERLSPIERAVFLLREIFDYDYDDIAPIVDKSTVNCRQIAR
RARQQVTKPRSRFPSSPEQHQQLTLKFMQACQQGEMEDLLQYLADDITLWSDGGGQVTAALKPIQGSAKVSGFLRAIYRY
QSKLGFTPDLELVQVNGQTGIQFSISGQVETIAVLETTGQQIISIFFIRNPQKLKIEQTHPSSILD

Sequences:

>Translated_306_residues
MGTQPSAASHPLTDDFLEYRSLLFAIAYRMLGTVMDAEDMVQDTFLKWQTVSKSQVRSAKSYLTTIITRLCIDRLRSAQV
QREQYIGPWLPEPIVSDLSADPNHRVELADSLTMAFLVMLERLSPIERAVFLLREIFDYDYDDIAPIVDKSTVNCRQIAR
RARQQVTKPRSRFPSSPEQHQQLTLKFMQACQQGEMEDLLQYLADDITLWSDGGGQVTAALKPIQGSAKVSGFLRAIYRY
QSKLGFTPDLELVQVNGQTGIQFSISGQVETIAVLETTGQQIISIFFIRNPQKLKIEQTHPSSILD
>Mature_305_residues
GTQPSAASHPLTDDFLEYRSLLFAIAYRMLGTVMDAEDMVQDTFLKWQTVSKSQVRSAKSYLTTIITRLCIDRLRSAQVQ
REQYIGPWLPEPIVSDLSADPNHRVELADSLTMAFLVMLERLSPIERAVFLLREIFDYDYDDIAPIVDKSTVNCRQIARR
ARQQVTKPRSRFPSSPEQHQQLTLKFMQACQQGEMEDLLQYLADDITLWSDGGGQVTAALKPIQGSAKVSGFLRAIYRYQ
SKLGFTPDLELVQVNGQTGIQFSISGQVETIAVLETTGQQIISIFFIRNPQKLKIEQTHPSSILD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:
GO:0003677: RNA polymerase sigma-24 subunit
GO:0003700: RNA polymerase sigma-24 subunit
GO:0006351: RNA polymerase sigma-24 subunit
GO:0006352: RNA polymerase sigma-24 subunit
GO:0006355: RNA polymerase sigma-24 subunit
GO:0016987: RNA polymerase sigma-24 subunit

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34638; Mature: 34507

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTQPSAASHPLTDDFLEYRSLLFAIAYRMLGTVMDAEDMVQDTFLKWQTVSKSQVRSAK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHH
SYLTTIITRLCIDRLRSAQVQREQYIGPWLPEPIVSDLSADPNHRVELADSLTMAFLVML
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHH
ERLSPIERAVFLLREIFDYDYDDIAPIVDKSTVNCRQIARRARQQVTKPRSRFPSSPEQH
HHHCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHCCCCHHHH
QQLTLKFMQACQQGEMEDLLQYLADDITLWSDGGGQVTAALKPIQGSAKVSGFLRAIYRY
HHHHHHHHHHHCCCCHHHHHHHHHHCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHH
QSKLGFTPDLELVQVNGQTGIQFSISGQVETIAVLETTGQQIISIFFIRNPQKLKIEQTH
HHHCCCCCCCEEEEECCCCCEEEEECCCEEEEEEEHHHHHHHHHHHHCCCCCEEEEECCC
PSSILD
CCCCCC
>Mature Secondary Structure 
GTQPSAASHPLTDDFLEYRSLLFAIAYRMLGTVMDAEDMVQDTFLKWQTVSKSQVRSAK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHH
SYLTTIITRLCIDRLRSAQVQREQYIGPWLPEPIVSDLSADPNHRVELADSLTMAFLVML
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHH
ERLSPIERAVFLLREIFDYDYDDIAPIVDKSTVNCRQIARRARQQVTKPRSRFPSSPEQH
HHHCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHCCCCHHHH
QQLTLKFMQACQQGEMEDLLQYLADDITLWSDGGGQVTAALKPIQGSAKVSGFLRAIYRY
HHHHHHHHHHHCCCCHHHHHHHHHHCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHH
QSKLGFTPDLELVQVNGQTGIQFSISGQVETIAVLETTGQQIISIFFIRNPQKLKIEQTH
HHHCCCCCCCEEEEECCCCCEEEEECCCEEEEEEEHHHHHHHHHHHHCCCCCEEEEECCC
PSSILD
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA