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The map label for this gene is 158333278

Identifier: 158333278

GI number: 158333278

Start: 47266

End: 49698

Strand: Direct

Name: 158333278

Synonym: AM1_0048

Alternate gene names: NA

Gene position: 47266-49698 (Clockwise)

Preceding gene: 158333277

Following gene: 158333283

Centisome position: 0.73

GC content: 45.7

Gene sequence:

>2433_bases
GTGACGCCGTCATCTCTTCCACCATCCAAACCCGAACAATCCGAACCCGAACAGATAGAATTTTCGTCTTTATCCCCTTC
AGAAATCTCCATCGATCAACCCAAAACAAAAAATACTGGTGCGAACCAAGAGTATCTAACCTCCATCAAAGCCAGATTAA
TCGCTTGGGGAATTGCCTTGAGTACATTACCTGTCTTAGCTGTAGGCACAGCAACCTACCTGACCGGTGAAACACTGAAC
CAGCAGCTCAGCGCCAATCCCGAAATCACCACCAGCTGGGATGAAGCCCAATCCACGCTTCAAAATCGAATTCCCCCTCT
ATTGGTAGGGACTGGAATCGTGGCAATCCTGTCGGGGGGCCTTGCCGTTTGGTTGATCAATCGTGAATTACGTCCCCTTC
GTCAAGCTGGTCGGCATTCAAATCAACTCGTTAACCGGTTGTATCGCTTAGAAACAGGTCCTGAAATCGAGAGTGAACCC
AAAGATGAGCTTTTAGCGCTGGCCAACAATATCAGCCTAATCGATGCTCAAATCCCCAACCTGATCCATTCTCAAGAACA
TGAAGCGGCTCGAGCAGAACTATTGATGCAGTTCATTGGTGAACTCCATGTCGCTCTATCAGAAGAAGACTTATTAAAAA
CGACCGTCGCCGAAGTGCGCCAAATCTTACAAACCGATCGAGTCACCATCTTTGCCCTCAACAATAACGGTGAGGGTACC
TTTGTCGCCGAATCTGTTGCCCCAGGTTATCCCAAGTTACAGTGGTCTACCCTACATGACCCTTGCTTTAACGAAGGCTA
TCAGGAGCAATATCGTCAGGGACGAGTCAGTGCAATTGACAATATTTACAATTCAGGACTGAACGACTGTCATATCGGTT
TGCTAGAGCGTTTTGCCGTCAAAGCAAACATTGTCGCTCCCATTCTCCAAAACGAGAATTTGTATGGCCTGTTAATAGCC
CATCAATGTGCAAGACCCAGGGAGTGGAATCAATCTGAAATCGGCCTGTTTAAGCAATTAGCATTGCAAGTAGGCTATGC
CTTAGACCGGGCTAGAGTCATGAGCCATCTCGATAGCCAAGTCAATCAATTGCAGCAGTTATTACACTTTACGCAATTAA
TCCGAGAATCATTACACACAGAAGAAATCCTGACAAATGCGGTTCAAGAGAGTCGCAAGGTTCTTAGAGCAGATCGGGTG
ATTGTTTATAGTTTCGATGAAAACTGGCAAGGCACTGTTGCAGCAGAAGCAGTCCAGCCAGGTATCTCCAAAATGGTGTG
GGCCGAAATCTCAGACCCATGCTTTGCAAACAAATACGTTGAGCAATATCGACGGGGACGAGTGCAGGCGATTAATAATG
TTAATGATGCTGGACTGACTGAGTGCCATGTTCAACAGTTGGAAAAATACGGCGTACAAGCCAACTTAGTTGTTCCTATT
CTGGTGGGAGAATATTTGTTTGGTTTACTCATTGCCCATCAATGCTCTGGCCCCAGAATATGGCAGTCCTCTGAAATCGA
TCTTTTTACTCAAATTGGCGTCCAATTGGGCCATGCGTTGGAACAAGCCAACGTTCTCACCCAAACAGAGCAAGAATGGA
TTGCCAATACCTCTCAAATTGATATAGATAATCAGCAACTTACGAACTTAGAGCAGCAACTTTCAGACTATCTACAGGCA
AATCGCCCTAGCATTCAATTTTTAGTGGATGGGGTCCATCAACATACTGAAACGGCTCAGTCTGCCTATTCCCATTTACA
AGCCATCATGGATTTTGCCCAAGAGGTTAACACCCTTACTCGGCAGATTCAGTCTCAAAATCACCAGATTGTGACTCAAG
TCGAAATAGCTCAAAATCATCCCCCCCACCTTCCACCCGCCGCTCAATCCGCCATCACTCAACTTCAAGAACTGGAGAAA
CCCTTACAGCAGCTTTCTCAAATTCGCATATTAGTCAATCAACTGTCCTCCCAGATGCAGCTACAGGTGATGAATATCAC
AGCAAAAGCACCTCAGGACTCAGAGGCCTATCCTGAATTATCTGGTTCAGCCCAAAAGATCAGCATTGTCGCTCAAAAGA
TAGAAGACAATTTGGCCCAAATGAAGCCAATACTAGAGTCTTTGCAACGAGATCTGCAACAAAATACGGCTATTCTAAAG
CCCCTAGCCCAACAAACTAGTACCGTTTCTACAGAACGATTTAGATCTGAGCAGCTATCCTCTAATCTAAATACTGAGTT
GGCTCAGCTCAATGATCAGATGAAGAAACTGACTCAGCTCGTGAGTAGCCATCTGCAAACATCTTCCACCGCAAGTCATC
AGATCTTTGAATTGAACCAGTTTCTGCAGCGTCTTGCACCACAAGCCCAATCGATGCAGGCCTCTATCCAAAAGATGGAA
ACAGCAGTAACTCCTGAACAATCTCCAGGTTGA

Upstream 100 bases:

>100_bases
AGTAGATTAGAGGGATACATCATTCAGGTTTGAGAACGAACTGAAACATTAAAAATTTGAAGATACAAAATCTGCACCTT
TCAACCATGAGGTTTGCACA

Downstream 100 bases:

>100_bases
TTCAGGCGTGTGTGCAAAGAATCAACTGATTTTGCAGCCCATTGAATGAACTGCCTCTATCAATGGCTCATGCCAAAATA
TGTCTGCTTCCATCACAATC

Product: GAF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 810; Mature: 809

Protein sequence:

>810_residues
MTPSSLPPSKPEQSEPEQIEFSSLSPSEISIDQPKTKNTGANQEYLTSIKARLIAWGIALSTLPVLAVGTATYLTGETLN
QQLSANPEITTSWDEAQSTLQNRIPPLLVGTGIVAILSGGLAVWLINRELRPLRQAGRHSNQLVNRLYRLETGPEIESEP
KDELLALANNISLIDAQIPNLIHSQEHEAARAELLMQFIGELHVALSEEDLLKTTVAEVRQILQTDRVTIFALNNNGEGT
FVAESVAPGYPKLQWSTLHDPCFNEGYQEQYRQGRVSAIDNIYNSGLNDCHIGLLERFAVKANIVAPILQNENLYGLLIA
HQCARPREWNQSEIGLFKQLALQVGYALDRARVMSHLDSQVNQLQQLLHFTQLIRESLHTEEILTNAVQESRKVLRADRV
IVYSFDENWQGTVAAEAVQPGISKMVWAEISDPCFANKYVEQYRRGRVQAINNVNDAGLTECHVQQLEKYGVQANLVVPI
LVGEYLFGLLIAHQCSGPRIWQSSEIDLFTQIGVQLGHALEQANVLTQTEQEWIANTSQIDIDNQQLTNLEQQLSDYLQA
NRPSIQFLVDGVHQHTETAQSAYSHLQAIMDFAQEVNTLTRQIQSQNHQIVTQVEIAQNHPPHLPPAAQSAITQLQELEK
PLQQLSQIRILVNQLSSQMQLQVMNITAKAPQDSEAYPELSGSAQKISIVAQKIEDNLAQMKPILESLQRDLQQNTAILK
PLAQQTSTVSTERFRSEQLSSNLNTELAQLNDQMKKLTQLVSSHLQTSSTASHQIFELNQFLQRLAPQAQSMQASIQKME
TAVTPEQSPG

Sequences:

>Translated_810_residues
MTPSSLPPSKPEQSEPEQIEFSSLSPSEISIDQPKTKNTGANQEYLTSIKARLIAWGIALSTLPVLAVGTATYLTGETLN
QQLSANPEITTSWDEAQSTLQNRIPPLLVGTGIVAILSGGLAVWLINRELRPLRQAGRHSNQLVNRLYRLETGPEIESEP
KDELLALANNISLIDAQIPNLIHSQEHEAARAELLMQFIGELHVALSEEDLLKTTVAEVRQILQTDRVTIFALNNNGEGT
FVAESVAPGYPKLQWSTLHDPCFNEGYQEQYRQGRVSAIDNIYNSGLNDCHIGLLERFAVKANIVAPILQNENLYGLLIA
HQCARPREWNQSEIGLFKQLALQVGYALDRARVMSHLDSQVNQLQQLLHFTQLIRESLHTEEILTNAVQESRKVLRADRV
IVYSFDENWQGTVAAEAVQPGISKMVWAEISDPCFANKYVEQYRRGRVQAINNVNDAGLTECHVQQLEKYGVQANLVVPI
LVGEYLFGLLIAHQCSGPRIWQSSEIDLFTQIGVQLGHALEQANVLTQTEQEWIANTSQIDIDNQQLTNLEQQLSDYLQA
NRPSIQFLVDGVHQHTETAQSAYSHLQAIMDFAQEVNTLTRQIQSQNHQIVTQVEIAQNHPPHLPPAAQSAITQLQELEK
PLQQLSQIRILVNQLSSQMQLQVMNITAKAPQDSEAYPELSGSAQKISIVAQKIEDNLAQMKPILESLQRDLQQNTAILK
PLAQQTSTVSTERFRSEQLSSNLNTELAQLNDQMKKLTQLVSSHLQTSSTASHQIFELNQFLQRLAPQAQSMQASIQKME
TAVTPEQSPG
>Mature_809_residues
TPSSLPPSKPEQSEPEQIEFSSLSPSEISIDQPKTKNTGANQEYLTSIKARLIAWGIALSTLPVLAVGTATYLTGETLNQ
QLSANPEITTSWDEAQSTLQNRIPPLLVGTGIVAILSGGLAVWLINRELRPLRQAGRHSNQLVNRLYRLETGPEIESEPK
DELLALANNISLIDAQIPNLIHSQEHEAARAELLMQFIGELHVALSEEDLLKTTVAEVRQILQTDRVTIFALNNNGEGTF
VAESVAPGYPKLQWSTLHDPCFNEGYQEQYRQGRVSAIDNIYNSGLNDCHIGLLERFAVKANIVAPILQNENLYGLLIAH
QCARPREWNQSEIGLFKQLALQVGYALDRARVMSHLDSQVNQLQQLLHFTQLIRESLHTEEILTNAVQESRKVLRADRVI
VYSFDENWQGTVAAEAVQPGISKMVWAEISDPCFANKYVEQYRRGRVQAINNVNDAGLTECHVQQLEKYGVQANLVVPIL
VGEYLFGLLIAHQCSGPRIWQSSEIDLFTQIGVQLGHALEQANVLTQTEQEWIANTSQIDIDNQQLTNLEQQLSDYLQAN
RPSIQFLVDGVHQHTETAQSAYSHLQAIMDFAQEVNTLTRQIQSQNHQIVTQVEIAQNHPPHLPPAAQSAITQLQELEKP
LQQLSQIRILVNQLSSQMQLQVMNITAKAPQDSEAYPELSGSAQKISIVAQKIEDNLAQMKPILESLQRDLQQNTAILKP
LAQQTSTVSTERFRSEQLSSNLNTELAQLNDQMKKLTQLVSSHLQTSSTASHQIFELNQFLQRLAPQAQSMQASIQKMET
AVTPEQSPG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003018
- InterPro:   IPR003660
- InterPro:   IPR016132 [H]

Pfam domain/function: PF01590 GAF; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 90396; Mature: 90265

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPSSLPPSKPEQSEPEQIEFSSLSPSEISIDQPKTKNTGANQEYLTSIKARLIAWGIAL
CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
STLPVLAVGTATYLTGETLNQQLSANPEITTSWDEAQSTLQNRIPPLLVGTGIVAILSGG
HHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHCCC
LAVWLINRELRPLRQAGRHSNQLVNRLYRLETGPEIESEPKDELLALANNISLIDAQIPN
CEEEEECHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEHHHHHH
LIHSQEHEAARAELLMQFIGELHVALSEEDLLKTTVAEVRQILQTDRVTIFALNNNGEGT
HHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCC
FVAESVAPGYPKLQWSTLHDPCFNEGYQEQYRQGRVSAIDNIYNSGLNDCHIGLLERFAV
EEECCCCCCCCCCEECCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHH
KANIVAPILQNENLYGLLIAHQCARPREWNQSEIGLFKQLALQVGYALDRARVMSHLDSQ
HHHHHHHHHCCCCEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNQLQQLLHFTQLIRESLHTEEILTNAVQESRKVLRADRVIVYSFDENWQGTVAAEAVQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHCC
GISKMVWAEISDPCFANKYVEQYRRGRVQAINNVNDAGLTECHVQQLEKYGVQANLVVPI
CHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHH
LVGEYLFGLLIAHQCSGPRIWQSSEIDLFTQIGVQLGHALEQANVLTQTEQEWIANTSQI
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DIDNQQLTNLEQQLSDYLQANRPSIQFLVDGVHQHTETAQSAYSHLQAIMDFAQEVNTLT
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQIQSQNHQIVTQVEIAQNHPPHLPPAAQSAITQLQELEKPLQQLSQIRILVNQLSSQMQ
HHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
LQVMNITAKAPQDSEAYPELSGSAQKISIVAQKIEDNLAQMKPILESLQRDLQQNTAILK
EEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLAQQTSTVSTERFRSEQLSSNLNTELAQLNDQMKKLTQLVSSHLQTSSTASHQIFELNQ
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
FLQRLAPQAQSMQASIQKMETAVTPEQSPG
HHHHHCCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TPSSLPPSKPEQSEPEQIEFSSLSPSEISIDQPKTKNTGANQEYLTSIKARLIAWGIAL
CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
STLPVLAVGTATYLTGETLNQQLSANPEITTSWDEAQSTLQNRIPPLLVGTGIVAILSGG
HHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHCCC
LAVWLINRELRPLRQAGRHSNQLVNRLYRLETGPEIESEPKDELLALANNISLIDAQIPN
CEEEEECHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEHHHHHH
LIHSQEHEAARAELLMQFIGELHVALSEEDLLKTTVAEVRQILQTDRVTIFALNNNGEGT
HHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCC
FVAESVAPGYPKLQWSTLHDPCFNEGYQEQYRQGRVSAIDNIYNSGLNDCHIGLLERFAV
EEECCCCCCCCCCEECCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHH
KANIVAPILQNENLYGLLIAHQCARPREWNQSEIGLFKQLALQVGYALDRARVMSHLDSQ
HHHHHHHHHCCCCEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNQLQQLLHFTQLIRESLHTEEILTNAVQESRKVLRADRVIVYSFDENWQGTVAAEAVQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHCC
GISKMVWAEISDPCFANKYVEQYRRGRVQAINNVNDAGLTECHVQQLEKYGVQANLVVPI
CHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHH
LVGEYLFGLLIAHQCSGPRIWQSSEIDLFTQIGVQLGHALEQANVLTQTEQEWIANTSQI
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DIDNQQLTNLEQQLSDYLQANRPSIQFLVDGVHQHTETAQSAYSHLQAIMDFAQEVNTLT
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQIQSQNHQIVTQVEIAQNHPPHLPPAAQSAITQLQELEKPLQQLSQIRILVNQLSSQMQ
HHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
LQVMNITAKAPQDSEAYPELSGSAQKISIVAQKIEDNLAQMKPILESLQRDLQQNTAILK
EEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLAQQTSTVSTERFRSEQLSSNLNTELAQLNDQMKKLTQLVSSHLQTSSTASHQIFELNQ
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
FLQRLAPQAQSMQASIQKMETAVTPEQSPG
HHHHHCCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]