Click here to switch to the map view.

The map label for this gene is 158333270

Identifier: 158333270

GI number: 158333270

Start: 41419

End: 43209

Strand: Reverse

Name: 158333270

Synonym: AM1_0040

Alternate gene names: NA

Gene position: 43209-41419 (Counterclockwise)

Preceding gene: 158333271

Following gene: 158333269

Centisome position: 0.66

GC content: 46.57

Gene sequence:

>1791_bases
ATGTCAATGATTTGGCGTAAGCTTGGGTTGATTAACCCTGCTTTAGTGGGCCTAGCTCTTTTATTGCCGACGACTGCGAT
CGCAGCCGAGTCACTAGAATTGACTGAGGAAGTTGTACCTGAAATTTCTGCAGTCGAGCAACTAGACACTGAGGCAGTGG
AGGCTTCTGAGCCCCTAGTACTAGCTGATGCTGATGTACCTACCACATCTGTTTCAGAGTTGATGAGCGAGACTCAAGAC
GACAATTTAGCTCAGGTTACCTCTGTTTCCCAGCTGTCTGATGTCCAGCCCGACGATTGGGCGTTTCAAGCTATTCAGTC
TCTAGTTGAGCGTTATGGTTGTGTCGCCGGTTACCCTAACGGCACTTTCCGCCCCAGCCGGGCCATGTCTCGTCGAGAAG
CAGCTGCGCTTGTCAATGCTTGTTTAGATAACCTCAGCAATCGATTTGCAACTAAAGAGGATCTGGACGCACTCAAAGCA
CTTCAAGATGAGTTCGCTGCTGAACTGGCTACTTTGCGCGGACGTGTGGATGGTTTAGAAGCTCGTGTGGCCACAGTCGA
AGCGCAGCAATTTTCCACGACTGCGAAACTTAATGGTGAAGTCGTCTTCGGATCTGCCTTTGTATTTGATGGAGATAATG
ATCCCTTAGACAGCATCCTGGGGGTAGATACGGATACTGGCAACACCCAAAACAATGGTGTTGTTGTTGAAGACCGTTTC
TTTCTTGGCTACCGGACTCGCCTGAACTTTGATGCTAGCTTCAGTGGTACTGATCGACTTCGTGTACGTTTAGAAGCCGC
TGATATTCCTGAACTAGATGAATTCGGTTCTGCAGGGACAAGTTTAGCCAGATTTGGTTTTGATGAAAATGACCCTGCTG
GCAATACGGTCATCCTAGACGAGCTTAACTATCGTTTTAAGCCAGCTGAGGATCTAACGCTCAAAATTGCGATTGTGGGT
GGTGACTACAAGGACGATGTCGAAACCTTTAACCCCTTCTTGAAGAGTAGTGGTAGTGGTGCTTTATCTCGCTTTTTCCG
TTTCAACCCACTAACGCAGCGGGGACCAGGAGGAACGACCCTCAGTGCTGTCTATGATGTCAGCGAAAAGGTCAATCTCT
CTGTTGTCTATGCAGCTGATGATGCCCAGTTTGCCACTACAGCGGGTAATGGTGCTAACAACGGTTTATTTGATTTTGAA
AATGGCACGTATGGGGTGTTTGCCCAGATTGGCTTTAATCCAACCGATGATATCGGTATTGGTGTTCAATATTCTCGTAA
CGAGTACACAGCGGGTAATGTTGACATCACATCCGATACGGGAGATGCGCCAGTTCTTACAGGTGGCCTAGCTCTAGGTG
GTGATACTTCCGATCCTTTCAATGGACTGGAAACCATTACTGATAACTTTGGCCTTTCATTTAATGCCAGAGTTGTTGAC
GGGTTTCATGTGTCTGGTTGGGGTGGTTTAACCTTAGCCCGTACTCCTGATATTGCAAATTCTCAAATTAAATTGTTGAC
TTGGGCCGCTAACCTCGTCTTCCCTGACTTGCTCCTAGAAGGTGGCAGAGGTTCCCTATCGTTTGGTCAGCAGCCTTACA
TTATCGATGGTGGTAATCTAAACATTGATGATGGGACTTCTTCCAACTTTACTGCTGAAGCACAGTATCAGTTTAAGGTC
AATGACAATATCAAGATCTCACCTGGATTAATTGTCATTTTCAATGCCAACAACACTTCTTCGAATGACCCTATCTTTAT
TCCAGTCATTCGAACCACCTTTAAGTTCTAA

Upstream 100 bases:

>100_bases
TCTTATCCTTTATGTACAGGCTGAAGATATTGTTCGAAGCCTGTTTCCATCTCAAGTAGCCAATTTGGCTATTTTTATTT
AGTGTGAGGAGATAATTTAT

Downstream 100 bases:

>100_bases
TCTAGAGAATTAGACTAACCTTAAGCCCCAAGTTCTCTAAGCAGAGCTTGGGGCTTAGCATTGGCAAAGAATTGAAAAAC
CAGCAAAAAACATCTTTAAA

Product: carbohydrate porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 596; Mature: 595

Protein sequence:

>596_residues
MSMIWRKLGLINPALVGLALLLPTTAIAAESLELTEEVVPEISAVEQLDTEAVEASEPLVLADADVPTTSVSELMSETQD
DNLAQVTSVSQLSDVQPDDWAFQAIQSLVERYGCVAGYPNGTFRPSRAMSRREAAALVNACLDNLSNRFATKEDLDALKA
LQDEFAAELATLRGRVDGLEARVATVEAQQFSTTAKLNGEVVFGSAFVFDGDNDPLDSILGVDTDTGNTQNNGVVVEDRF
FLGYRTRLNFDASFSGTDRLRVRLEAADIPELDEFGSAGTSLARFGFDENDPAGNTVILDELNYRFKPAEDLTLKIAIVG
GDYKDDVETFNPFLKSSGSGALSRFFRFNPLTQRGPGGTTLSAVYDVSEKVNLSVVYAADDAQFATTAGNGANNGLFDFE
NGTYGVFAQIGFNPTDDIGIGVQYSRNEYTAGNVDITSDTGDAPVLTGGLALGGDTSDPFNGLETITDNFGLSFNARVVD
GFHVSGWGGLTLARTPDIANSQIKLLTWAANLVFPDLLLEGGRGSLSFGQQPYIIDGGNLNIDDGTSSNFTAEAQYQFKV
NDNIKISPGLIVIFNANNTSSNDPIFIPVIRTTFKF

Sequences:

>Translated_596_residues
MSMIWRKLGLINPALVGLALLLPTTAIAAESLELTEEVVPEISAVEQLDTEAVEASEPLVLADADVPTTSVSELMSETQD
DNLAQVTSVSQLSDVQPDDWAFQAIQSLVERYGCVAGYPNGTFRPSRAMSRREAAALVNACLDNLSNRFATKEDLDALKA
LQDEFAAELATLRGRVDGLEARVATVEAQQFSTTAKLNGEVVFGSAFVFDGDNDPLDSILGVDTDTGNTQNNGVVVEDRF
FLGYRTRLNFDASFSGTDRLRVRLEAADIPELDEFGSAGTSLARFGFDENDPAGNTVILDELNYRFKPAEDLTLKIAIVG
GDYKDDVETFNPFLKSSGSGALSRFFRFNPLTQRGPGGTTLSAVYDVSEKVNLSVVYAADDAQFATTAGNGANNGLFDFE
NGTYGVFAQIGFNPTDDIGIGVQYSRNEYTAGNVDITSDTGDAPVLTGGLALGGDTSDPFNGLETITDNFGLSFNARVVD
GFHVSGWGGLTLARTPDIANSQIKLLTWAANLVFPDLLLEGGRGSLSFGQQPYIIDGGNLNIDDGTSSNFTAEAQYQFKV
NDNIKISPGLIVIFNANNTSSNDPIFIPVIRTTFKF
>Mature_595_residues
SMIWRKLGLINPALVGLALLLPTTAIAAESLELTEEVVPEISAVEQLDTEAVEASEPLVLADADVPTTSVSELMSETQDD
NLAQVTSVSQLSDVQPDDWAFQAIQSLVERYGCVAGYPNGTFRPSRAMSRREAAALVNACLDNLSNRFATKEDLDALKAL
QDEFAAELATLRGRVDGLEARVATVEAQQFSTTAKLNGEVVFGSAFVFDGDNDPLDSILGVDTDTGNTQNNGVVVEDRFF
LGYRTRLNFDASFSGTDRLRVRLEAADIPELDEFGSAGTSLARFGFDENDPAGNTVILDELNYRFKPAEDLTLKIAIVGG
DYKDDVETFNPFLKSSGSGALSRFFRFNPLTQRGPGGTTLSAVYDVSEKVNLSVVYAADDAQFATTAGNGANNGLFDFEN
GTYGVFAQIGFNPTDDIGIGVQYSRNEYTAGNVDITSDTGDAPVLTGGLALGGDTSDPFNGLETITDNFGLSFNARVVDG
FHVSGWGGLTLARTPDIANSQIKLLTWAANLVFPDLLLEGGRGSLSFGQQPYIIDGGNLNIDDGTSSNFTAEAQYQFKVN
DNIKISPGLIVIFNANNTSSNDPIFIPVIRTTFKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SLH (S-layer homology) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007049
- InterPro:   IPR001119 [H]

Pfam domain/function: PF04966 OprB; PF00395 SLH [H]

EC number: NA

Molecular weight: Translated: 63913; Mature: 63782

Theoretical pI: Translated: 3.94; Mature: 3.94

Prosite motif: PS01072 SLH_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMIWRKLGLINPALVGLALLLPTTAIAAESLELTEEVVPEISAVEQLDTEAVEASEPLV
CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
LADADVPTTSVSELMSETQDDNLAQVTSVSQLSDVQPDDWAFQAIQSLVERYGCVAGYPN
EEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECCCC
GTFRPSRAMSRREAAALVNACLDNLSNRFATKEDLDALKALQDEFAAELATLRGRVDGLE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
ARVATVEAQQFSTTAKLNGEVVFGSAFVFDGDNDPLDSILGVDTDTGNTQNNGVVVEDRF
EEEEEEEHHHHCCEEEECCEEEEEEEEEECCCCCCHHHHHCCCCCCCCCCCCCEEEEEEE
FLGYRTRLNFDASFSGTDRLRVRLEAADIPELDEFGSAGTSLARFGFDENDPAGNTVILD
EEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHCCCCCHHHHCCCCCCCCCCCEEEEE
ELNYRFKPAEDLTLKIAIVGGDYKDDVETFNPFLKSSGSGALSRFFRFNPLTQRGPGGTT
CCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCE
LSAVYDVSEKVNLSVVYAADDAQFATTAGNGANNGLFDFENGTYGVFAQIGFNPTDDIGI
EEEEEECCCCCEEEEEEEECCCEEEEECCCCCCCCEEEECCCCEEEEEEECCCCCCCCCC
GVQYSRNEYTAGNVDITSDTGDAPVLTGGLALGGDTSDPFNGLETITDNFGLSFNARVVD
CEEECCCCCCCCCEEEECCCCCCCEEECCEEECCCCCCCCCCHHHHHHCCCCEEEEEEEE
GFHVSGWGGLTLARTPDIANSQIKLLTWAANLVFPDLLLEGGRGSLSFGQQPYIIDGGNL
CEEECCCCCEEEEECCCCCCCEEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCEEEECCEE
NIDDGTSSNFTAEAQYQFKVNDNIKISPGLIVIFNANNTSSNDPIFIPVIRTTFKF
EECCCCCCCEEEEEEEEEEECCCEEECCCEEEEEECCCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure 
SMIWRKLGLINPALVGLALLLPTTAIAAESLELTEEVVPEISAVEQLDTEAVEASEPLV
CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
LADADVPTTSVSELMSETQDDNLAQVTSVSQLSDVQPDDWAFQAIQSLVERYGCVAGYPN
EEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECCCC
GTFRPSRAMSRREAAALVNACLDNLSNRFATKEDLDALKALQDEFAAELATLRGRVDGLE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
ARVATVEAQQFSTTAKLNGEVVFGSAFVFDGDNDPLDSILGVDTDTGNTQNNGVVVEDRF
EEEEEEEHHHHCCEEEECCEEEEEEEEEECCCCCCHHHHHCCCCCCCCCCCCCEEEEEEE
FLGYRTRLNFDASFSGTDRLRVRLEAADIPELDEFGSAGTSLARFGFDENDPAGNTVILD
EEEEEEEEECCCCCCCCCEEEEEEECCCCCCHHHHCCCCCHHHHCCCCCCCCCCCEEEEE
ELNYRFKPAEDLTLKIAIVGGDYKDDVETFNPFLKSSGSGALSRFFRFNPLTQRGPGGTT
CCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCE
LSAVYDVSEKVNLSVVYAADDAQFATTAGNGANNGLFDFENGTYGVFAQIGFNPTDDIGI
EEEEEECCCCCEEEEEEEECCCEEEEECCCCCCCCEEEECCCCEEEEEEECCCCCCCCCC
GVQYSRNEYTAGNVDITSDTGDAPVLTGGLALGGDTSDPFNGLETITDNFGLSFNARVVD
CEEECCCCCCCCCEEEECCCCCCCEEECCEEECCCCCCCCCCHHHHHHCCCCEEEEEEEE
GFHVSGWGGLTLARTPDIANSQIKLLTWAANLVFPDLLLEGGRGSLSFGQQPYIIDGGNL
CEEECCCCCEEEEECCCCCCCEEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCEEEECCEE
NIDDGTSSNFTAEAQYQFKVNDNIKISPGLIVIFNANNTSSNDPIFIPVIRTTFKF
EECCCCCCCEEEEEEEEEEECCCEEECCCEEEEEECCCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]