Click here to switch to the map view.

The map label for this gene is ydeD [C]

Identifier: 158333244

GI number: 158333244

Start: 10405

End: 11535

Strand: Direct

Name: ydeD [C]

Synonym: AM1_0013

Alternate gene names: 158333244

Gene position: 10405-11535 (Clockwise)

Preceding gene: 158333243

Following gene: 158333250

Centisome position: 0.16

GC content: 50.75

Gene sequence:

>1131_bases
TTGTGCTTTGAGACCAGCTTAAATAAAGCCAATTTCTCTTTTCAATCCTTGCTACGGGTCATTATGCAATTTAGTCTGCC
TCACTCTCAACGCATTCCCAATCGTCTGACCTTGATCGCCCCCTTCTTCCTATGGGGAACCGCGATGGTTGCCATGAAGG
GGGTTTTGGCTCACACCACTCCCCTCTTTATGGGGGGCTTGCGCATTGCCCCCGCTGGGCTTCTGGTTATCGGAGTCGCT
CTACTCTTGGGTAAGTCTCAGCCCAAGGGATGGCGAGCCTGGCTATGGATATTGCTATTTGCCCTAGTCGATGTCACCCT
ATTCCAAGGTTTTCTTGCATTAGGGCTCTCCCATACCTCTGCAGGGCTTGGTTCTGTGATGATCGATTCACAGCCCCTCG
TGGTGGCCTTACTGGCGCTGGTCCTATATGGGGAGCGAATTGGGCTGTGGGGATGGTTGGGATTAGGCATTGGCGTGAGC
GGGATTAGCTGTATTGGGTTGCCTGATGAATGGATTTTACAGTTGGGGTCTGGGGAATGGCTGCAACAAGATTGGCAGCA
GGTTTTTAATTGGCAATACCTAAATCAGCTCACTCAAAGTGGGGAGTTTCTGATGCTGCTAGCGGCCCTGTCAATGGCAG
TGGGGACCGTGATGATCCGCCAAGTGTGCCGTTACGCCGACCCCATCAGTGCCACCGGTTGGCATATGGTCATTGGGGGA
CTTCCCCTGTTTATAGGGTCTGGACTTTGGGAATCTGAGCAATGGGTCCATCTAACCCAAATTGATTGGCTCTCTATTGG
CTATGCTGCCGTTTTTGGCAGTGCAGTTGCCTATGGCCTCTTTTTCTATTTCGCGTCTAAGGGTAACTTAACCAGCCTCA
GTTCCTTAACATTTTTAACGCCAGTCTTTGCCCTGATCTTTGGCAATCTGTTTTTGGCAGAAGTTCTCAGCCCGATCCAA
ACCCTGGGCGTCTGCCTCACCCTCGTCAGTATTTATTTCGTTAACCAAAGAGAGCAGCTTCCCACCCTGGGACATCTATG
GTCGTCTCTAGAGCTTCGGATGTTGGGTACCAAAGATTCTAAAACTGCGGAGATTCCGGTCCGAGTTGATCCCAAAACGA
CCGTTAAATAA

Upstream 100 bases:

>100_bases
CGAAGCATCGGTCTTATAATCGAAACAAAGGTTACAGAAAGTTTAAATTTCTCAGACTAGATTTACTAAACCTGGGACGT
TTGTGACTTTCTTTCATCCG

Downstream 100 bases:

>100_bases
TAGCCCCTATTCCCCCGGACTAGGGTTCGGGAGAACGCTATTTAACAACACTCCCATTAGGCTGGACAGCCCAATACCTT
CCAAGGAGAACTGGCCTATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MCFETSLNKANFSFQSLLRVIMQFSLPHSQRIPNRLTLIAPFFLWGTAMVAMKGVLAHTTPLFMGGLRIAPAGLLVIGVA
LLLGKSQPKGWRAWLWILLFALVDVTLFQGFLALGLSHTSAGLGSVMIDSQPLVVALLALVLYGERIGLWGWLGLGIGVS
GISCIGLPDEWILQLGSGEWLQQDWQQVFNWQYLNQLTQSGEFLMLLAALSMAVGTVMIRQVCRYADPISATGWHMVIGG
LPLFIGSGLWESEQWVHLTQIDWLSIGYAAVFGSAVAYGLFFYFASKGNLTSLSSLTFLTPVFALIFGNLFLAEVLSPIQ
TLGVCLTLVSIYFVNQREQLPTLGHLWSSLELRMLGTKDSKTAEIPVRVDPKTTVK

Sequences:

>Translated_376_residues
MCFETSLNKANFSFQSLLRVIMQFSLPHSQRIPNRLTLIAPFFLWGTAMVAMKGVLAHTTPLFMGGLRIAPAGLLVIGVA
LLLGKSQPKGWRAWLWILLFALVDVTLFQGFLALGLSHTSAGLGSVMIDSQPLVVALLALVLYGERIGLWGWLGLGIGVS
GISCIGLPDEWILQLGSGEWLQQDWQQVFNWQYLNQLTQSGEFLMLLAALSMAVGTVMIRQVCRYADPISATGWHMVIGG
LPLFIGSGLWESEQWVHLTQIDWLSIGYAAVFGSAVAYGLFFYFASKGNLTSLSSLTFLTPVFALIFGNLFLAEVLSPIQ
TLGVCLTLVSIYFVNQREQLPTLGHLWSSLELRMLGTKDSKTAEIPVRVDPKTTVK
>Mature_376_residues
MCFETSLNKANFSFQSLLRVIMQFSLPHSQRIPNRLTLIAPFFLWGTAMVAMKGVLAHTTPLFMGGLRIAPAGLLVIGVA
LLLGKSQPKGWRAWLWILLFALVDVTLFQGFLALGLSHTSAGLGSVMIDSQPLVVALLALVLYGERIGLWGWLGLGIGVS
GISCIGLPDEWILQLGSGEWLQQDWQQVFNWQYLNQLTQSGEFLMLLAALSMAVGTVMIRQVCRYADPISATGWHMVIGG
LPLFIGSGLWESEQWVHLTQIDWLSIGYAAVFGSAVAYGLFFYFASKGNLTSLSSLTFLTPVFALIFGNLFLAEVLSPIQ
TLGVCLTLVSIYFVNQREQLPTLGHLWSSLELRMLGTKDSKTAEIPVRVDPKTTVK

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 41314; Mature: 41314

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCFETSLNKANFSFQSLLRVIMQFSLPHSQRIPNRLTLIAPFFLWGTAMVAMKGVLAHTT
CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
PLFMGGLRIAPAGLLVIGVALLLGKSQPKGWRAWLWILLFALVDVTLFQGFLALGLSHTS
HHHHCCCHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AGLGSVMIDSQPLVVALLALVLYGERIGLWGWLGLGIGVSGISCIGLPDEWILQLGSGEW
CCCCCEEECCCCHHHHHHHHHHHCCHHCHHHHHHHHCCCCCEEEECCCHHHHHCCCCCHH
LQQDWQQVFNWQYLNQLTQSGEFLMLLAALSMAVGTVMIRQVCRYADPISATGWHMVIGG
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCC
LPLFIGSGLWESEQWVHLTQIDWLSIGYAAVFGSAVAYGLFFYFASKGNLTSLSSLTFLT
HHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
PVFALIFGNLFLAEVLSPIQTLGVCLTLVSIYFVNQREQLPTLGHLWSSLELRMLGTKDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHCEEEEECCCCC
KTAEIPVRVDPKTTVK
CCCCCEEEECCCCCCC
>Mature Secondary Structure
MCFETSLNKANFSFQSLLRVIMQFSLPHSQRIPNRLTLIAPFFLWGTAMVAMKGVLAHTT
CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
PLFMGGLRIAPAGLLVIGVALLLGKSQPKGWRAWLWILLFALVDVTLFQGFLALGLSHTS
HHHHCCCHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AGLGSVMIDSQPLVVALLALVLYGERIGLWGWLGLGIGVSGISCIGLPDEWILQLGSGEW
CCCCCEEECCCCHHHHHHHHHHHCCHHCHHHHHHHHCCCCCEEEECCCHHHHHCCCCCHH
LQQDWQQVFNWQYLNQLTQSGEFLMLLAALSMAVGTVMIRQVCRYADPISATGWHMVIGG
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCC
LPLFIGSGLWESEQWVHLTQIDWLSIGYAAVFGSAVAYGLFFYFASKGNLTSLSSLTFLT
HHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
PVFALIFGNLFLAEVLSPIQTLGVCLTLVSIYFVNQREQLPTLGHLWSSLELRMLGTKDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHCEEEEECCCCC
KTAEIPVRVDPKTTVK
CCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]