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The map label for this gene is jag [H]

Identifier: 158319054

GI number: 158319054

Start: 8977730

End: 8978323

Strand: Reverse

Name: jag [H]

Synonym: Franean1_7337

Alternate gene names: 158319054

Gene position: 8978323-8977730 (Counterclockwise)

Preceding gene: 158319055

Following gene: 158319053

Centisome position: 99.96

GC content: 71.55

Gene sequence:

>594_bases
ATGACCGGTTCGGCACCTGACCTGGCCGTGGAAGGACCCGAGGCCAACGAGGACGGCCCGACGGCCGGGGCCGACACGAC
CGCGGTCGAGGACACCACGAGCTCGAACGGCTCGAACGGCTCCGACGAGCGCCGGCTCGCCGACCTCGAGCAGGAAGGCG
AGATCGCGGCCGACTACATCGAGGGCCTGCTCGACATCGTCGACATGGACGGCGACCTCGATCTCGACGTCGAGGGCGGG
CGTGCCGTCGTCGCCGTGGTCGGGGACGGGCTGGACAAGCTGATCGGGCCCGGCGGTGAGACCCTCGAGGCGCTGCAGGA
GCTGACCCGGCTCGCCGTGCTGCAGAAGACGGGCGTCCGCAGCCGGCTCATGCTCGACGTGGGCGGTCACCGCGCCCGTC
GCCGCATCGAGCTGCGGAAGGTCGCGACCAACGCCGCGGAGCGGGTCGTCGACACCGGCGAGCCCCAGAAGCTGGCCGCG
ATGACACCCTTCGAGCGCAAGGTCGTGCACGACGTGATCGCCACGATCGACGGCGTGCGCAGCGAGTCCGAGGGCGAGGA
GCCCACCCGCCGGGTCGTCGTTCTGCCTGACTGA

Upstream 100 bases:

>100_bases
TCCCGGGTGGTTGCCCCCCGTAACCGTCGCGCTGACCCCGCGGCGCCCGGACGTCCCGTACGCTCGGCATCGCCGCCCCC
TTTCCCCTGGAGTAACGCTG

Downstream 100 bases:

>100_bases
CGGCCGTGTACCGTCGCCGGAGCTTGTCCGGGGCAGGGAACCGACCGCGGATCTGACGCTCGCGCACGGTTCTGACACCG
TGCGCGGCCGTGATGCCGTG

Product: single-stranded nucleic acid binding R3H domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MTGSAPDLAVEGPEANEDGPTAGADTTAVEDTTSSNGSNGSDERRLADLEQEGEIAADYIEGLLDIVDMDGDLDLDVEGG
RAVVAVVGDGLDKLIGPGGETLEALQELTRLAVLQKTGVRSRLMLDVGGHRARRRIELRKVATNAAERVVDTGEPQKLAA
MTPFERKVVHDVIATIDGVRSESEGEEPTRRVVVLPD

Sequences:

>Translated_197_residues
MTGSAPDLAVEGPEANEDGPTAGADTTAVEDTTSSNGSNGSDERRLADLEQEGEIAADYIEGLLDIVDMDGDLDLDVEGG
RAVVAVVGDGLDKLIGPGGETLEALQELTRLAVLQKTGVRSRLMLDVGGHRARRRIELRKVATNAAERVVDTGEPQKLAA
MTPFERKVVHDVIATIDGVRSESEGEEPTRRVVVLPD
>Mature_196_residues
TGSAPDLAVEGPEANEDGPTAGADTTAVEDTTSSNGSNGSDERRLADLEQEGEIAADYIEGLLDIVDMDGDLDLDVEGGR
AVVAVVGDGLDKLIGPGGETLEALQELTRLAVLQKTGVRSRLMLDVGGHRARRRIELRKVATNAAERVVDTGEPQKLAAM
TPFERKVVHDVIATIDGVRSESEGEEPTRRVVVLPD

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 20839; Mature: 20708

Theoretical pI: Translated: 4.12; Mature: 4.12

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGSAPDLAVEGPEANEDGPTAGADTTAVEDTTSSNGSNGSDERRLADLEQEGEIAADYI
CCCCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHHH
EGLLDIVDMDGDLDLDVEGGRAVVAVVGDGLDKLIGPGGETLEALQELTRLAVLQKTGVR
HHHHHHHCCCCCEEEEECCCEEEEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
SRLMLDVGGHRARRRIELRKVATNAAERVVDTGEPQKLAAMTPFERKVVHDVIATIDGVR
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHCCC
SESEGEEPTRRVVVLPD
CCCCCCCCCCEEEEECC
>Mature Secondary Structure 
TGSAPDLAVEGPEANEDGPTAGADTTAVEDTTSSNGSNGSDERRLADLEQEGEIAADYI
CCCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHHH
EGLLDIVDMDGDLDLDVEGGRAVVAVVGDGLDKLIGPGGETLEALQELTRLAVLQKTGVR
HHHHHHHCCCCCEEEEECCCEEEEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
SRLMLDVGGHRARRRIELRKVATNAAERVVDTGEPQKLAAMTPFERKVVHDVIATIDGVR
CEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHCCC
SESEGEEPTRRVVVLPD
CCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]