| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158319013
Identifier: 158319013
GI number: 158319013
Start: 8914490
End: 8915929
Strand: Direct
Name: 158319013
Synonym: Franean1_7296
Alternate gene names: NA
Gene position: 8914490-8915929 (Clockwise)
Preceding gene: 158319012
Following gene: 158319014
Centisome position: 99.25
GC content: 69.1
Gene sequence:
>1440_bases ATGACTGGCACACCGACCTCCGGACCAGACGATACTATCGTCCTCGCCTGGACCCCTCTATCGCCTCTCCAGGATCTAGC TGGTGGTGCGGCTGACGAGTTTTTGAGTTCGGTTGGTAAAGCCTTCTGTAACATGGCGGCCGACCTGTCGTCGTCTGTCT TCAGCTTTGCGGCGCAGAAGACAGCGGTCGACCTGAACGCGCAGTATGTCGTCGACAACTACAACATCGTCTTCGGCATG TCGGTGCTGATCGTCACCGGGCTCTTCCTCTGTTCGTGCACCGTGGCGGCCCTGCGGGGCGATCCGCACGTCTTCTTCCG GGCCCTCGCCACGACCGGCACGGCGATCATCGGGTCGTTCATCGCCCTGACGCTGCTGCAGATGGTCCTCGCCGCCTCGG ACGGCATGGCGGATGCGTTCGGCGACAACAAGGCGCTGGGCGCCGACCTGGTCGGGCAGCTGCGACAACTACCCGAACAG GGCAATTTCGCCCTCGACCTGGTGCTGTCGCTGCTCGTGGCGATCTTCTCGTTCGCGCTGTTCGTGGTGCTCTACATCCG CAAGGTCGCGATCATCGTCGTGGCTGTGTTCATCCCGCTGTACCTGGCGGGCCAGCCGACGATGACGACGAGTGCCTGGA TGAAGCGGGCCACCGAGATGCTGGTGGCGCTGATTTTTGCGAAGCCGGTGATCTACGCAATATTTGCCCTCGGGGCTGGC ATCGCCCAGGATCCCAGTGGATCGGCCGTTGACCAGACGCTGAGCATTCTCAGTGGTGTCGTTGTGATGATTGCGGCGGT GTTCTCGCCGTTCATGCTGATGCACCTGCTCGGGTTCGCCGACGTCCAGCTCATGCGCGCGGTCGGATCGGCCGGGCGCC GCAGCGCCGCATCGTTCGGGCACGGAGCGGGTGCTCTGCTCGGTTCCTCGTCCCGGGAGACGTTCCGTGGGATCGGCTCG CGTCTGCAGACCCGGAACCGGGGAATGCTCGGCGACGCCGGTGCCATCGCGGGCGCCGGTGTGCCGACGGCCCGCCCGAG TGTTCGCCCGGGTCGCGGTGGCGTCGGCTCCCCGCTCGGAGTTCCGGCCCGGGCCGCCGCGGGGGCGGCTGGCGGAACCG CCGGAACCGCGGCGGTCCGCGGCGTTCGTGCCAGGGTCACCCGCTCGGGCGCGGCCCCGGCTGTGGCCGGCGGCCGTGAG GCGGCGTCCAGCGGCACGCGGGCGACCGCTTCGGTCCGTGCTACGTCCACCGCACGGCCCCAGACAGCGCGGGCGATCAC GTCAGGTGGCGGCGGCGCGGCCCGTCCGGGCACGTCAGGCGGCGGGCGCAGTACCGCGTCCGCGCCGAGCGGATCGGCAG GCGCCTCGGCCGGCAGGCCCCCGGTGACGCCGTCACCACAGCCGCGGGTCACCCCGCCGGCGCGTACCGGGGGTGGGTGA
Upstream 100 bases:
>100_bases GGAAGCTACTTAACGCAGATGACGGCCCAGACGGACCGCTTCTTCGCAGCCGCTCTGCAGGGGAGTACAGGAATTTCATA ATGGCTGGAGGTCCTAAAGA
Downstream 100 bases:
>100_bases GCAGCTCATGGCCGCTGAACGCAGCTACCGCTTCGGGCCGCTGGAGCGCGGCGGTGTGCTCCTCGGCATGCGCTGGCCTC AGCTCGCGCTCCTGATCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 479; Mature: 478
Protein sequence:
>479_residues MTGTPTSGPDDTIVLAWTPLSPLQDLAGGAADEFLSSVGKAFCNMAADLSSSVFSFAAQKTAVDLNAQYVVDNYNIVFGM SVLIVTGLFLCSCTVAALRGDPHVFFRALATTGTAIIGSFIALTLLQMVLAASDGMADAFGDNKALGADLVGQLRQLPEQ GNFALDLVLSLLVAIFSFALFVVLYIRKVAIIVVAVFIPLYLAGQPTMTTSAWMKRATEMLVALIFAKPVIYAIFALGAG IAQDPSGSAVDQTLSILSGVVVMIAAVFSPFMLMHLLGFADVQLMRAVGSAGRRSAASFGHGAGALLGSSSRETFRGIGS RLQTRNRGMLGDAGAIAGAGVPTARPSVRPGRGGVGSPLGVPARAAAGAAGGTAGTAAVRGVRARVTRSGAAPAVAGGRE AASSGTRATASVRATSTARPQTARAITSGGGGAARPGTSGGGRSTASAPSGSAGASAGRPPVTPSPQPRVTPPARTGGG
Sequences:
>Translated_479_residues MTGTPTSGPDDTIVLAWTPLSPLQDLAGGAADEFLSSVGKAFCNMAADLSSSVFSFAAQKTAVDLNAQYVVDNYNIVFGM SVLIVTGLFLCSCTVAALRGDPHVFFRALATTGTAIIGSFIALTLLQMVLAASDGMADAFGDNKALGADLVGQLRQLPEQ GNFALDLVLSLLVAIFSFALFVVLYIRKVAIIVVAVFIPLYLAGQPTMTTSAWMKRATEMLVALIFAKPVIYAIFALGAG IAQDPSGSAVDQTLSILSGVVVMIAAVFSPFMLMHLLGFADVQLMRAVGSAGRRSAASFGHGAGALLGSSSRETFRGIGS RLQTRNRGMLGDAGAIAGAGVPTARPSVRPGRGGVGSPLGVPARAAAGAAGGTAGTAAVRGVRARVTRSGAAPAVAGGRE AASSGTRATASVRATSTARPQTARAITSGGGGAARPGTSGGGRSTASAPSGSAGASAGRPPVTPSPQPRVTPPARTGGG >Mature_478_residues TGTPTSGPDDTIVLAWTPLSPLQDLAGGAADEFLSSVGKAFCNMAADLSSSVFSFAAQKTAVDLNAQYVVDNYNIVFGMS VLIVTGLFLCSCTVAALRGDPHVFFRALATTGTAIIGSFIALTLLQMVLAASDGMADAFGDNKALGADLVGQLRQLPEQG NFALDLVLSLLVAIFSFALFVVLYIRKVAIIVVAVFIPLYLAGQPTMTTSAWMKRATEMLVALIFAKPVIYAIFALGAGI AQDPSGSAVDQTLSILSGVVVMIAAVFSPFMLMHLLGFADVQLMRAVGSAGRRSAASFGHGAGALLGSSSRETFRGIGSR LQTRNRGMLGDAGAIAGAGVPTARPSVRPGRGGVGSPLGVPARAAAGAAGGTAGTAAVRGVRARVTRSGAAPAVAGGREA ASSGTRATASVRATSTARPQTARAITSGGGGAARPGTSGGGRSTASAPSGSAGASAGRPPVTPSPQPRVTPPARTGGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47953; Mature: 47822
Theoretical pI: Translated: 11.29; Mature: 11.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGTPTSGPDDTIVLAWTPLSPLQDLAGGAADEFLSSVGKAFCNMAADLSSSVFSFAAQK CCCCCCCCCCCEEEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TAVDLNAQYVVDNYNIVFGMSVLIVTGLFLCSCTVAALRGDPHVFFRALATTGTAIIGSF HHEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH IALTLLQMVLAASDGMADAFGDNKALGADLVGQLRQLPEQGNFALDLVLSLLVAIFSFAL HHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH FVVLYIRKVAIIVVAVFIPLYLAGQPTMTTSAWMKRATEMLVALIFAKPVIYAIFALGAG HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC IAQDPSGSAVDQTLSILSGVVVMIAAVFSPFMLMHLLGFADVQLMRAVGSAGRRSAASFG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC HGAGALLGSSSRETFRGIGSRLQTRNRGMLGDAGAIAGAGVPTARPSVRPGRGGVGSPLG CCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VPARAAAGAAGGTAGTAAVRGVRARVTRSGAAPAVAGGREAASSGTRATASVRATSTARP CCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCC QTARAITSGGGGAARPGTSGGGRSTASAPSGSAGASAGRPPVTPSPQPRVTPPARTGGG HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TGTPTSGPDDTIVLAWTPLSPLQDLAGGAADEFLSSVGKAFCNMAADLSSSVFSFAAQK CCCCCCCCCCEEEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TAVDLNAQYVVDNYNIVFGMSVLIVTGLFLCSCTVAALRGDPHVFFRALATTGTAIIGSF HHEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH IALTLLQMVLAASDGMADAFGDNKALGADLVGQLRQLPEQGNFALDLVLSLLVAIFSFAL HHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH FVVLYIRKVAIIVVAVFIPLYLAGQPTMTTSAWMKRATEMLVALIFAKPVIYAIFALGAG HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC IAQDPSGSAVDQTLSILSGVVVMIAAVFSPFMLMHLLGFADVQLMRAVGSAGRRSAASFG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC HGAGALLGSSSRETFRGIGSRLQTRNRGMLGDAGAIAGAGVPTARPSVRPGRGGVGSPLG CCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VPARAAAGAAGGTAGTAAVRGVRARVTRSGAAPAVAGGREAASSGTRATASVRATSTARP CCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCC QTARAITSGGGGAARPGTSGGGRSTASAPSGSAGASAGRPPVTPSPQPRVTPPARTGGG HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA