| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318981
Identifier: 158318981
GI number: 158318981
Start: 8866797
End: 8867756
Strand: Reverse
Name: 158318981
Synonym: Franean1_7264
Alternate gene names: NA
Gene position: 8867756-8866797 (Counterclockwise)
Preceding gene: 158318982
Following gene: 158318979
Centisome position: 98.73
GC content: 69.38
Gene sequence:
>960_bases GTGTCGCGTACCCTGCGCAAGAGGTCGAGCCGCCGCGGACTGGCCGCCGGCGTCGGCCGCAAGATACTCGTCGCCTTCGT CTTTCTCGCCGGGAGCGGGCTGGTGGTGGTCGGGGGGCCGTCGCCCGCGTGGGCCGCCGACACCACCCAGTACGCCGGCG ACTCCACCCGGGGCAACGGGGCGGCCGTCCCGTTCGAGGGCCTCACGGACCAGAACGGCGGCCCGGTGCCCATCTCCGGG GCCATCGGCGTCGACCTGGTTCTCGGCTCGACGCAGCAGCCCTACCTGCCGTGCCAGAACTACAACCGGACCACCGGTAC CGGCGACACCTTCGTCAACGCCTGCCAGGAACGGGGCAGCTACGCGACGTACACGCGTTTCGCCACGGGCAAGGGGCTTG TCTTCCCCAACGGGTACTTCATGGGCGACAGCCAGCCTGACCTGGTCAAGGGCGGCACGCTGAACACCGGTTGGGGCCGC CGCACGGCCGGGCTTTCGTTCGAGTTCTACCCGCAGGTCGACCGGGACGCCGAGTTCGTCCACTCGCGTTTCTACATCGA CGTCTTCGACCATCGCGCCAACGGCTGGACATACTCCGCGCACGTCGGCCGCATCAAACTGACGACGCTCAATGATCCGG GTACGGCGCAGGTCGGCGGCCGGCTCACCGACGGTGGCCAGACACCGGCCCGTGACCGGGTGAAGTTCCTTATCTTCGGC GGTGACGCCCGTTCGTCGACCGGGTACCCGATCTCGTCCTTCGCCGTCTTCACGAGCTCGGGGGCGGCGAACTGGAGCAG CGGCGCGCTGTACGCCGGCGCGCAGCGCATCACCGTCACAGACACCGCGACCGGCCGCGAATGCGTCATTGACCTGAAGC CGATCAGCGGTCGGGGCAACGCGCTCGACATCGACCTCTCCCGGCCCGGCTTCGGCCACGAGGGCAGCGTCTGCCACTGA
Upstream 100 bases:
>100_bases TTGGTGACGCGTGACGCCGGTCTTCTGTCGAGAAGACGCGTCGCGAAATCGGCGCCTGTCCTTGGTGCTCCGTCCAGCCC TTTGTCGAACCGGGAGTGTC
Downstream 100 bases:
>100_bases GCAGTGCCCTCAGTTCACGAGGTGCTCTCAGTTTGCACATCGCCGGGCAGCGGGACCTGACGTGCATAGAACGGCGGCAC CGGCCAGCGGCCGGGACGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MSRTLRKRSSRRGLAAGVGRKILVAFVFLAGSGLVVVGGPSPAWAADTTQYAGDSTRGNGAAVPFEGLTDQNGGPVPISG AIGVDLVLGSTQQPYLPCQNYNRTTGTGDTFVNACQERGSYATYTRFATGKGLVFPNGYFMGDSQPDLVKGGTLNTGWGR RTAGLSFEFYPQVDRDAEFVHSRFYIDVFDHRANGWTYSAHVGRIKLTTLNDPGTAQVGGRLTDGGQTPARDRVKFLIFG GDARSSTGYPISSFAVFTSSGAANWSSGALYAGAQRITVTDTATGRECVIDLKPISGRGNALDIDLSRPGFGHEGSVCH
Sequences:
>Translated_319_residues MSRTLRKRSSRRGLAAGVGRKILVAFVFLAGSGLVVVGGPSPAWAADTTQYAGDSTRGNGAAVPFEGLTDQNGGPVPISG AIGVDLVLGSTQQPYLPCQNYNRTTGTGDTFVNACQERGSYATYTRFATGKGLVFPNGYFMGDSQPDLVKGGTLNTGWGR RTAGLSFEFYPQVDRDAEFVHSRFYIDVFDHRANGWTYSAHVGRIKLTTLNDPGTAQVGGRLTDGGQTPARDRVKFLIFG GDARSSTGYPISSFAVFTSSGAANWSSGALYAGAQRITVTDTATGRECVIDLKPISGRGNALDIDLSRPGFGHEGSVCH >Mature_318_residues SRTLRKRSSRRGLAAGVGRKILVAFVFLAGSGLVVVGGPSPAWAADTTQYAGDSTRGNGAAVPFEGLTDQNGGPVPISGA IGVDLVLGSTQQPYLPCQNYNRTTGTGDTFVNACQERGSYATYTRFATGKGLVFPNGYFMGDSQPDLVKGGTLNTGWGRR TAGLSFEFYPQVDRDAEFVHSRFYIDVFDHRANGWTYSAHVGRIKLTTLNDPGTAQVGGRLTDGGQTPARDRVKFLIFGG DARSSTGYPISSFAVFTSSGAANWSSGALYAGAQRITVTDTATGRECVIDLKPISGRGNALDIDLSRPGFGHEGSVCH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33714; Mature: 33583
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRTLRKRSSRRGLAAGVGRKILVAFVFLAGSGLVVVGGPSPAWAADTTQYAGDSTRGNG CCCHHHHHHHCCCHHHHCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHCCCCCCCCCC AAVPFEGLTDQNGGPVPISGAIGVDLVLGSTQQPYLPCQNYNRTTGTGDTFVNACQERGS CCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC YATYTRFATGKGLVFPNGYFMGDSQPDLVKGGTLNTGWGRRTAGLSFEFYPQVDRDAEFV EEEEEEEECCCCEECCCCEECCCCCCCEEECCCCCCCCCCEECCCCEEECCCCCCCHHHH HSRFYIDVFDHRANGWTYSAHVGRIKLTTLNDPGTAQVGGRLTDGGQTPARDRVKFLIFG HEEEEEEEEECCCCCEEEEEEECEEEEEEECCCCCCCCCCEECCCCCCCCCCCEEEEEEC GDARSSTGYPISSFAVFTSSGAANWSSGALYAGAQRITVTDTATGRECVIDLKPISGRGN CCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCEEEEEEECCCCCEEEEEEEECCCCCC ALDIDLSRPGFGHEGSVCH EEEEEECCCCCCCCCCCCC >Mature Secondary Structure SRTLRKRSSRRGLAAGVGRKILVAFVFLAGSGLVVVGGPSPAWAADTTQYAGDSTRGNG CCHHHHHHHCCCHHHHCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHCCCCCCCCCC AAVPFEGLTDQNGGPVPISGAIGVDLVLGSTQQPYLPCQNYNRTTGTGDTFVNACQERGS CCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC YATYTRFATGKGLVFPNGYFMGDSQPDLVKGGTLNTGWGRRTAGLSFEFYPQVDRDAEFV EEEEEEEECCCCEECCCCEECCCCCCCEEECCCCCCCCCCEECCCCEEECCCCCCCHHHH HSRFYIDVFDHRANGWTYSAHVGRIKLTTLNDPGTAQVGGRLTDGGQTPARDRVKFLIFG HEEEEEEEEECCCCCEEEEEEECEEEEEEECCCCCCCCCCEECCCCCCCCCCCEEEEEEC GDARSSTGYPISSFAVFTSSGAANWSSGALYAGAQRITVTDTATGRECVIDLKPISGRGN CCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCEEEEEEECCCCCEEEEEEEECCCCCC ALDIDLSRPGFGHEGSVCH EEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA