| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318953
Identifier: 158318953
GI number: 158318953
Start: 8834748
End: 8835965
Strand: Direct
Name: 158318953
Synonym: Franean1_7236
Alternate gene names: NA
Gene position: 8834748-8835965 (Clockwise)
Preceding gene: 158318952
Following gene: 158318955
Centisome position: 98.36
GC content: 76.44
Gene sequence:
>1218_bases GTGTCGGCCGCCCGCAGCCGCCGCTTCGTCGCGGTACGGCTTCTCATGTCCTTGCTCGCGGCATTGCTGGTCGTGGCCGG GTGCGGGCTCGCGGGCGGTGCCGGGCCAAGTGCCCGGCCCGGCCCGACGAGCGACGAGGGGACCATCCCCACCCCGCCGC CGACGATCGGTCCCGATGCCTTCGAGCAAAGTGGACGGGGTGGTCAGATCCGGCTGACGCTGCCGGACACGGGCACGCCG GGGCCGTACCCGCTGGTCGTGGCGCTGCACAGCCTGTACCACGATGGCACCGAGCCACAGCGCGGCTGGGGGCTCGACGC GCTCGCCCGGTCGGCCGGCTTCGCGGTCGTCTACCCCGACGGGCTGGGGATGTCCTGGAACGCGGGCACCTGCTGCGGCC CGGCCGCGGCCGCCAGCAGTGACGACGTCGGCTGGCTGCGTTCACTCATCGCGCACCTGGAGAGCAGGTACCCGATCGAT CCGCGCCGGGTCAGCATCATCGGGCTGTCGAACGGCGGCATGCTCGCCTACCGCTACGCCTGCGAGCACGGGGACGAGCT CGCCGGGTTCGCGGTCGTCGCCGCCAGTCTGCAGACCTTCAACTGCACTCCGCCCGCGCCCGTAACCATGGTGTCGGTGC ACGGCGGAATGGACGGCCACGTCCCGTACGCCGGCGCGCTGTGGTCCGAGGCCCTGCAGACGGGGATCACGCCCGTCGAG GTGAGCCTCGCCCCGTTCCGGGCGGTGGACGGCTGCCCGTCACCCACCCAGCCCGCCGACACCACGACCACCGGCGCGGA CGGCCGTCCGATCGGCGCGACCGGAGCCCAGGTCGGGGCGGTGGACCCGGCCGGGTCCGGCACCGCCGGGCCAGCCGACC CGGCGATCATCGCCGCCGCCGGCCCCGGGCTGCTGCCCGCCACCACACCGCCGGCGGCCGGCCAGGCACCGCTCGGCCAG GCACCGCTGGGGCAGCCGCCGGCGACGGGACCGGGCGCGCCCGCGGCCCAGCCGCCCGCGCCGCCCGTCCAGGCGCCGCC GGTGGCCGTCCGGCACGAGACGACCTGTTCGACGTCCGCCCGCCTCGTGCAGTACGTGCTGCCGGCGCTGGGGCACGGCT GGCCGCCGCTGACCGGCGCCGGCTCCTTCGACACGGCCGCCGTGCTGTGGGAGCTGCTGGGGCCGGCCCGCTCGGCCACC GCCGGCCCCCGGATCTGA
Upstream 100 bases:
>100_bases GCAAATGAGAACGACCTCGCACGTAGCAGCCCTAACACTAAGAGTAATCAACGACACCGTTGACGCGCGGGCCTGTGGGC GGCGCGTCAGAATACCGGTC
Downstream 100 bases:
>100_bases GCGATCCCGCCCTGCCGGCCCCAGACAGCCAAACCGGCCCCAGACAGCCAAACCGGCGTCAGGCGGCTGAGCTGGCCTCA GGCGGCCGGCTGGAACGAGG
Product: putative hydrolase/esterase LpqP
Products: NA
Alternate protein names: Poly(3-Hydroxybutyrate) Depolymerase-Like Protein; Polyhydroxybutyrate Depolymerase; Lipoprotein; Esterase; Lipoprotein LpqP; Secreted Hydrolase; Esterase Lipoprotein LpqC; Secreted Esterase; Esterase Lipoprotein; Hydrolase; Poly(3-Hydroxybutyrate) Depolymerase; Esterase/Lipase/Thioesterase; Carbohydrate Esterase Family 1 Protein; Alpha/Beta Family Hydrolase; LOW QUALITY PROTEIN Esterase Lipoprotein LpqC; Secreted Protein
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MSAARSRRFVAVRLLMSLLAALLVVAGCGLAGGAGPSARPGPTSDEGTIPTPPPTIGPDAFEQSGRGGQIRLTLPDTGTP GPYPLVVALHSLYHDGTEPQRGWGLDALARSAGFAVVYPDGLGMSWNAGTCCGPAAAASSDDVGWLRSLIAHLESRYPID PRRVSIIGLSNGGMLAYRYACEHGDELAGFAVVAASLQTFNCTPPAPVTMVSVHGGMDGHVPYAGALWSEALQTGITPVE VSLAPFRAVDGCPSPTQPADTTTTGADGRPIGATGAQVGAVDPAGSGTAGPADPAIIAAAGPGLLPATTPPAAGQAPLGQ APLGQPPATGPGAPAAQPPAPPVQAPPVAVRHETTCSTSARLVQYVLPALGHGWPPLTGAGSFDTAAVLWELLGPARSAT AGPRI
Sequences:
>Translated_405_residues MSAARSRRFVAVRLLMSLLAALLVVAGCGLAGGAGPSARPGPTSDEGTIPTPPPTIGPDAFEQSGRGGQIRLTLPDTGTP GPYPLVVALHSLYHDGTEPQRGWGLDALARSAGFAVVYPDGLGMSWNAGTCCGPAAAASSDDVGWLRSLIAHLESRYPID PRRVSIIGLSNGGMLAYRYACEHGDELAGFAVVAASLQTFNCTPPAPVTMVSVHGGMDGHVPYAGALWSEALQTGITPVE VSLAPFRAVDGCPSPTQPADTTTTGADGRPIGATGAQVGAVDPAGSGTAGPADPAIIAAAGPGLLPATTPPAAGQAPLGQ APLGQPPATGPGAPAAQPPAPPVQAPPVAVRHETTCSTSARLVQYVLPALGHGWPPLTGAGSFDTAAVLWELLGPARSAT AGPRI >Mature_404_residues SAARSRRFVAVRLLMSLLAALLVVAGCGLAGGAGPSARPGPTSDEGTIPTPPPTIGPDAFEQSGRGGQIRLTLPDTGTPG PYPLVVALHSLYHDGTEPQRGWGLDALARSAGFAVVYPDGLGMSWNAGTCCGPAAAASSDDVGWLRSLIAHLESRYPIDP RRVSIIGLSNGGMLAYRYACEHGDELAGFAVVAASLQTFNCTPPAPVTMVSVHGGMDGHVPYAGALWSEALQTGITPVEV SLAPFRAVDGCPSPTQPADTTTTGADGRPIGATGAQVGAVDPAGSGTAGPADPAIIAAAGPGLLPATTPPAAGQAPLGQA PLGQPPATGPGAPAAQPPAPPVQAPPVAVRHETTCSTSARLVQYVLPALGHGWPPLTGAGSFDTAAVLWELLGPARSATA GPRI
Specific function: Unknown
COG id: COG3509
COG function: function code Q; Poly(3-hydroxybutyrate) depolymerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40429; Mature: 40298
Theoretical pI: Translated: 5.82; Mature: 5.82
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00678 WD_REPEATS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAARSRRFVAVRLLMSLLAALLVVAGCGLAGGAGPSARPGPTSDEGTIPTPPPTIGPDA CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH FEQSGRGGQIRLTLPDTGTPGPYPLVVALHSLYHDGTEPQRGWGLDALARSAGFAVVYPD HHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCEEEECCC GLGMSWNAGTCCGPAAAASSDDVGWLRSLIAHLESRYPIDPRRVSIIGLSNGGMLAYRYA CCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEE CEHGDELAGFAVVAASLQTFNCTPPAPVTMVSVHGGMDGHVPYAGALWSEALQTGITPVE HHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEE VSLAPFRAVDGCPSPTQPADTTTTGADGRPIGATGAQVGAVDPAGSGTAGPADPAIIAAA EECCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC GPGLLPATTPPAAGQAPLGQAPLGQPPATGPGAPAAQPPAPPVQAPPVAVRHETTCSTSA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHH RLVQYVLPALGHGWPPLTGAGSFDTAAVLWELLGPARSATAGPRI HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHCCCCCCCC >Mature Secondary Structure SAARSRRFVAVRLLMSLLAALLVVAGCGLAGGAGPSARPGPTSDEGTIPTPPPTIGPDA CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH FEQSGRGGQIRLTLPDTGTPGPYPLVVALHSLYHDGTEPQRGWGLDALARSAGFAVVYPD HHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCEEEECCC GLGMSWNAGTCCGPAAAASSDDVGWLRSLIAHLESRYPIDPRRVSIIGLSNGGMLAYRYA CCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEE CEHGDELAGFAVVAASLQTFNCTPPAPVTMVSVHGGMDGHVPYAGALWSEALQTGITPVE HHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEE VSLAPFRAVDGCPSPTQPADTTTTGADGRPIGATGAQVGAVDPAGSGTAGPADPAIIAAA EECCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC GPGLLPATTPPAAGQAPLGQAPLGQPPATGPGAPAAQPPAPPVQAPPVAVRHETTCSTSA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHH RLVQYVLPALGHGWPPLTGAGSFDTAAVLWELLGPARSATAGPRI HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA