| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318899
Identifier: 158318899
GI number: 158318899
Start: 8768589
End: 8769791
Strand: Reverse
Name: 158318899
Synonym: Franean1_7182
Alternate gene names: NA
Gene position: 8769791-8768589 (Counterclockwise)
Preceding gene: 158318900
Following gene: 158318894
Centisome position: 97.64
GC content: 66.5
Gene sequence:
>1203_bases GTGCCCGCGACCAAAGTCGACTTTCCCGTCTTCGACGCCGACAACCACATGTACGAGACACCCGACGCATTCACGAAGTT CCTCCCCGAGGAATACGCCGGCCTGATCAAGTATGTGCAGGTCAACGGGCGTGACAAGATCGCGGTCAGGGGTGTGATCT CCGAGTACATCCCGAACCCGACGTTCAGTGTCGTGGCGCGGCCGGGTGCCTGGGAGGACTACTTCAAGAACGGCAACCCG GACGGGAAGTCGACCCGGGAGCTGATGGGCAAGCCGATCCGCTCCCCGGAGGCCTTCTTCTCCCCGGAGCCCCGCCTCGC CCTGATGGACGAGCTGAACATCGACCGGGCACTCATGTGGCCGACGCTGGCGAGCCTGCTCGAGGACCGGCTCCGCATGG ACCCGAAGGCCACGCACGTCGTTGTCCACGCGCTGAACCAGTGGATGCACGAGCACTGGAGCTTCAACTACGAGGACCGC ATCTTCGCCACGCCGGTCATCACGCTGCCGATCGTGAGCGAGGCCATCAAGGAACTCGAGTGGGTTCTGGAGCGCGGCGC GAAGATCATCCTCATTCGGCCGGCGCCCGTGCCCGGCTACGAGGGCTTCCGGTCGTTCGCGCTGCCCGAGTTCGACCCGT TCTGGCAGAAGGTCGTCGAGGCGGACGTCACCGTCGGTCTGCACTCCTCCGACGACGGCCTGACCCGCTACTACAACATG TGGGAGGGCCGGCAGGACGGTGAGCACCTGCCGTTCGCCTCGCCGTCGGCCTTCCTCGACATCATGCACCTGCAGGGCCG TGGCATCTTCGACACCGTCGCCTCGCTGATCGGGCACGGGCTGCTCACCCGGTTCCCGAGCCTGCGGATCCTGCCCGTCG AGAACGGCTCCGGGTGGGTGCGCCCCTTCGTCGAGGCCATCGGCACCTCGTACGCGCACAGCCCGAAGCTGTACGACGAG GACCCGCTGAAGGTGCTCAAGCGCAACGTCTGGATCCACCCGTTCCACGAGGAGAGCCCGCGCGGCCTCATCGACCTGCT GGGCGTCGACCGGGTCGTGTTCGGCTCCGACTACCCGCACGCCGAGGGGATGTCCGACCCGGTGTCCTACGTGCACGAGC TTGAGGGCCTGCCCAAGGAGGACATCGCCCGGGTGATGGGCGGCAACCTCGCCGAGGCGCTCAAACTGCCCCTCACGGTC TGA
Upstream 100 bases:
>100_bases GGATGGTCGTGCGTCCCGGCCCTGTGCTGTGTCGGGGAGTCGCGCGGCTGTCTCGTGGCATTCGGCTGGAGTGGTTCGGC CAGCCAGTACGGAGGAATAC
Downstream 100 bases:
>100_bases GTCGGGCTCGTCGGACCCGTCGGGCTCGTCGGGCTCGTCGGGCCCGTCAGGCCCGGCGGACCTGTTAGGCCAACCAGGTG CTTCGGGCCGGCTGCCCGAA
Product: amidohydrolase 2
Products: NA
Alternate protein names: Amidase; Amidohydrolase; Metal-Dependent Hydrolase; Barh Protein; TIM-Barrel Fold Metal-Dependent Hydrolase; Metal-Dependent Amidohydrolase; Amidohydrolase Family
Number of amino acids: Translated: 400; Mature: 399
Protein sequence:
>400_residues MPATKVDFPVFDADNHMYETPDAFTKFLPEEYAGLIKYVQVNGRDKIAVRGVISEYIPNPTFSVVARPGAWEDYFKNGNP DGKSTRELMGKPIRSPEAFFSPEPRLALMDELNIDRALMWPTLASLLEDRLRMDPKATHVVVHALNQWMHEHWSFNYEDR IFATPVITLPIVSEAIKELEWVLERGAKIILIRPAPVPGYEGFRSFALPEFDPFWQKVVEADVTVGLHSSDDGLTRYYNM WEGRQDGEHLPFASPSAFLDIMHLQGRGIFDTVASLIGHGLLTRFPSLRILPVENGSGWVRPFVEAIGTSYAHSPKLYDE DPLKVLKRNVWIHPFHEESPRGLIDLLGVDRVVFGSDYPHAEGMSDPVSYVHELEGLPKEDIARVMGGNLAEALKLPLTV
Sequences:
>Translated_400_residues MPATKVDFPVFDADNHMYETPDAFTKFLPEEYAGLIKYVQVNGRDKIAVRGVISEYIPNPTFSVVARPGAWEDYFKNGNP DGKSTRELMGKPIRSPEAFFSPEPRLALMDELNIDRALMWPTLASLLEDRLRMDPKATHVVVHALNQWMHEHWSFNYEDR IFATPVITLPIVSEAIKELEWVLERGAKIILIRPAPVPGYEGFRSFALPEFDPFWQKVVEADVTVGLHSSDDGLTRYYNM WEGRQDGEHLPFASPSAFLDIMHLQGRGIFDTVASLIGHGLLTRFPSLRILPVENGSGWVRPFVEAIGTSYAHSPKLYDE DPLKVLKRNVWIHPFHEESPRGLIDLLGVDRVVFGSDYPHAEGMSDPVSYVHELEGLPKEDIARVMGGNLAEALKLPLTV >Mature_399_residues PATKVDFPVFDADNHMYETPDAFTKFLPEEYAGLIKYVQVNGRDKIAVRGVISEYIPNPTFSVVARPGAWEDYFKNGNPD GKSTRELMGKPIRSPEAFFSPEPRLALMDELNIDRALMWPTLASLLEDRLRMDPKATHVVVHALNQWMHEHWSFNYEDRI FATPVITLPIVSEAIKELEWVLERGAKIILIRPAPVPGYEGFRSFALPEFDPFWQKVVEADVTVGLHSSDDGLTRYYNMW EGRQDGEHLPFASPSAFLDIMHLQGRGIFDTVASLIGHGLLTRFPSLRILPVENGSGWVRPFVEAIGTSYAHSPKLYDED PLKVLKRNVWIHPFHEESPRGLIDLLGVDRVVFGSDYPHAEGMSDPVSYVHELEGLPKEDIARVMGGNLAEALKLPLTV
Specific function: Unknown
COG id: COG2159
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45201; Mature: 45070
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPATKVDFPVFDADNHMYETPDAFTKFLPEEYAGLIKYVQVNGRDKIAVRGVISEYIPNP CCCCCCCCCEECCCCCCCCCHHHHHHHCHHHHHHHHHEEEECCCCCCHHHHHHHHHCCCC TFSVVARPGAWEDYFKNGNPDGKSTRELMGKPIRSPEAFFSPEPRLALMDELNIDRALMW CEEEEECCCCCHHHHCCCCCCCCHHHHHHCCCCCCCHHHCCCCCCEEHHHHCCCCHHHHH PTLASLLEDRLRMDPKATHVVVHALNQWMHEHWSFNYEDRIFATPVITLPIVSEAIKELE HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHH WVLERGAKIILIRPAPVPGYEGFRSFALPEFDPFWQKVVEADVTVGLHSSDDGLTRYYNM HHHHCCCEEEEEECCCCCCHHHHHHCCCCCCCHHHHHHHHHHHEEEECCCCCHHHHHHHH WEGRQDGEHLPFASPSAFLDIMHLQGRGIFDTVASLIGHGLLTRFPSLRILPVENGSGWV HCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHH RPFVEAIGTSYAHSPKLYDEDPLKVLKRNVWIHPFHEESPRGLIDLLGVDRVVFGSDYPH HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEECCCCCCCCCHHHHHCCCCEEECCCCCC AEGMSDPVSYVHELEGLPKEDIARVMGGNLAEALKLPLTV CCCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHCCCCC >Mature Secondary Structure PATKVDFPVFDADNHMYETPDAFTKFLPEEYAGLIKYVQVNGRDKIAVRGVISEYIPNP CCCCCCCCEECCCCCCCCCHHHHHHHCHHHHHHHHHEEEECCCCCCHHHHHHHHHCCCC TFSVVARPGAWEDYFKNGNPDGKSTRELMGKPIRSPEAFFSPEPRLALMDELNIDRALMW CEEEEECCCCCHHHHCCCCCCCCHHHHHHCCCCCCCHHHCCCCCCEEHHHHCCCCHHHHH PTLASLLEDRLRMDPKATHVVVHALNQWMHEHWSFNYEDRIFATPVITLPIVSEAIKELE HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHH WVLERGAKIILIRPAPVPGYEGFRSFALPEFDPFWQKVVEADVTVGLHSSDDGLTRYYNM HHHHCCCEEEEEECCCCCCHHHHHHCCCCCCCHHHHHHHHHHHEEEECCCCCHHHHHHHH WEGRQDGEHLPFASPSAFLDIMHLQGRGIFDTVASLIGHGLLTRFPSLRILPVENGSGWV HCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHH RPFVEAIGTSYAHSPKLYDEDPLKVLKRNVWIHPFHEESPRGLIDLLGVDRVVFGSDYPH HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEECCCCCCCCCHHHHHCCCCEEECCCCCC AEGMSDPVSYVHELEGLPKEDIARVMGGNLAEALKLPLTV CCCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA