| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318826
Identifier: 158318826
GI number: 158318826
Start: 8668598
End: 8669887
Strand: Direct
Name: 158318826
Synonym: Franean1_7100
Alternate gene names: NA
Gene position: 8668598-8669887 (Clockwise)
Preceding gene: 158318825
Following gene: 158318828
Centisome position: 96.51
GC content: 66.67
Gene sequence:
>1290_bases ATGCGCTACGACGACATGATCCTTGTCAGCATCGACGATCACATCATCGAACCGCCCGACATGTTCGCGGACCACCTCCC CGAGCGGTACAAGCAGGACGCGCCGCACGTGGTGCGCCTGCCTGGTGGCGCCGACGCGTGGAAGTTCCGGGACACGGTGA TCCCCAACGTCGCCCTCAACGCGGTGGCCGGCCGACCCAAGGAGGAGTACGGACTCGAACCACAGGGCTTAGACGAGATC CGTCCGGGGTGCTACCAGGTGGACGAGCGGATCAAGGACATGAACGCGGGCGGCATCCTCGCGTCGATGAACTTCCCGTC GTTCCCGGGGTTCGCGGCCCGGCTGTTCGCCACCGAGGACCCAGACTTCTCCCTCGCGCTGGTGCGGGCGTACAACGACT GGCACCTCGACGAATGGTGCGGCGCGCACCCAGGCCGGTTCATCCCGATGGCACTGCCCGTCATCTGGGACGCCGAGCTG TGCGCGGCCGAGGTACGCCGGGTCGCCGCGAAGGGATGCCACTCGCTGACCTTCACCGAGAATCCCGCGGCGCTGGGATA CCCCAGCTTTCACGACGCCTACTGGAACCCGTTGTGGCAGGCGGTGTGCGACACGAACACCGTGCTGTCGATCCACATCG GCTCGTCAGGCCAGCTGACCATCCCCGCTCCCGACTCGCCGCCCGACGTGCTGATCACACTCCAACCGATGAACATCGTC TCGGCCGCCGCCGACCTGCTGTGGTCACCGGTACTCAAGAACTTCCCCGGCATCAGGATCGCGCTGTCCGAGGGCGGTAC AGGGTGGATCCCCTACTTTCTGGAGCGGGTCGACCGCACCTTCCACATGCACGCCACCTGGACGATGCAGGACTTCGGCG GCCGGCTCCCGTCCGAGGTGTTCCGCGAGCACTTCCTGACCTGCTTCATCAGCGACCCGCTCGGGGTCGAACTTCGCCAC CGGATCGGCATCGACAACATCGCCTGGGAGTGCGACTACCCGCACAGCGACTCGATGTGGCCGGGCGCTCCAGAGGAGCT CGGCGAAGTGATGAACCGACTCGCCGTGCCGGAACCCGAGATCAACAAAATGACCTACGAGAACGCCCTGCGCTGGTACT CCTTTGACCCCTTCGCCCATGTTCCGCGGGAGCACGCCACGGTGGGGGCGCTGCGGGCCCAGGCCGCCGGGCACGACGTC TCCATCCGGGCGCTGAGCCACCGCACCTACGAGCGCGGCGAGAAGCTTGCGGCCTACCAGGCGATGGCAGCCTCCGCACC TGAGCGGTAG
Upstream 100 bases:
>100_bases CCCGCGCTCCTGTCGGCAAATGACCCCGCGCACGACACGAAAGGGCTCGGCCTCGTGACCCGCTGTCCGGGCCCCTTCCC GGACCATCGAAAGGATCACC
Downstream 100 bases:
>100_bases CCAGACCCCTAGCGGTCGAGCGCGACGCTGGTACAGCTCCGGTCGGCGGTGGTACCCAGGTCAGGTGGTGGCGGGAGCTG TTCCGGCCGCTACGACGGTG
Product: amidohydrolase 2
Products: NA
Alternate protein names: Amidase; Amidohydrolase Family Protein; Metal-Dependent Hydrolase; Barh Protein; TIM-Barrel Fold Metal-Dependent Hydrolase; Metal-Dependent Amidohydrolase; Amidohydrolase 2 Protein; Hydrolase; Aminocarboxymuconate-Semialdehyde Decarboxylase; Amidohydrolase Family; Minocarboxymuconate-Semialdehyde Decarboxylase.
Number of amino acids: Translated: 429; Mature: 429
Protein sequence:
>429_residues MRYDDMILVSIDDHIIEPPDMFADHLPERYKQDAPHVVRLPGGADAWKFRDTVIPNVALNAVAGRPKEEYGLEPQGLDEI RPGCYQVDERIKDMNAGGILASMNFPSFPGFAARLFATEDPDFSLALVRAYNDWHLDEWCGAHPGRFIPMALPVIWDAEL CAAEVRRVAAKGCHSLTFTENPAALGYPSFHDAYWNPLWQAVCDTNTVLSIHIGSSGQLTIPAPDSPPDVLITLQPMNIV SAAADLLWSPVLKNFPGIRIALSEGGTGWIPYFLERVDRTFHMHATWTMQDFGGRLPSEVFREHFLTCFISDPLGVELRH RIGIDNIAWECDYPHSDSMWPGAPEELGEVMNRLAVPEPEINKMTYENALRWYSFDPFAHVPREHATVGALRAQAAGHDV SIRALSHRTYERGEKLAAYQAMAASAPER
Sequences:
>Translated_429_residues MRYDDMILVSIDDHIIEPPDMFADHLPERYKQDAPHVVRLPGGADAWKFRDTVIPNVALNAVAGRPKEEYGLEPQGLDEI RPGCYQVDERIKDMNAGGILASMNFPSFPGFAARLFATEDPDFSLALVRAYNDWHLDEWCGAHPGRFIPMALPVIWDAEL CAAEVRRVAAKGCHSLTFTENPAALGYPSFHDAYWNPLWQAVCDTNTVLSIHIGSSGQLTIPAPDSPPDVLITLQPMNIV SAAADLLWSPVLKNFPGIRIALSEGGTGWIPYFLERVDRTFHMHATWTMQDFGGRLPSEVFREHFLTCFISDPLGVELRH RIGIDNIAWECDYPHSDSMWPGAPEELGEVMNRLAVPEPEINKMTYENALRWYSFDPFAHVPREHATVGALRAQAAGHDV SIRALSHRTYERGEKLAAYQAMAASAPER >Mature_429_residues MRYDDMILVSIDDHIIEPPDMFADHLPERYKQDAPHVVRLPGGADAWKFRDTVIPNVALNAVAGRPKEEYGLEPQGLDEI RPGCYQVDERIKDMNAGGILASMNFPSFPGFAARLFATEDPDFSLALVRAYNDWHLDEWCGAHPGRFIPMALPVIWDAEL CAAEVRRVAAKGCHSLTFTENPAALGYPSFHDAYWNPLWQAVCDTNTVLSIHIGSSGQLTIPAPDSPPDVLITLQPMNIV SAAADLLWSPVLKNFPGIRIALSEGGTGWIPYFLERVDRTFHMHATWTMQDFGGRLPSEVFREHFLTCFISDPLGVELRH RIGIDNIAWECDYPHSDSMWPGAPEELGEVMNRLAVPEPEINKMTYENALRWYSFDPFAHVPREHATVGALRAQAAGHDV SIRALSHRTYERGEKLAAYQAMAASAPER
Specific function: Unknown
COG id: COG2159
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47998; Mature: 47998
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYDDMILVSIDDHIIEPPDMFADHLPERYKQDAPHVVRLPGGADAWKFRDTVIPNVALN CCCCCEEEEEECCCCCCCHHHHHHHCHHHHHCCCCCEEECCCCCCCCCHHHHCCCCHHHH AVAGRPKEEYGLEPQGLDEIRPGCYQVDERIKDMNAGGILASMNFPSFPGFAARLFATED HHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHEEEEECCC PDFSLALVRAYNDWHLDEWCGAHPGRFIPMALPVIWDAELCAAEVRRVAAKGCHSLTFTE CCCEEEEEEECCCCCCHHHHCCCCCCEEEEECCEEECHHHHHHHHHHHHHCCCCEEEECC NPAALGYPSFHDAYWNPLWQAVCDTNTVLSIHIGSSGQLTIPAPDSPPDVLITLQPMNIV CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCCCCCCCEEEEECCHHHH SAAADLLWSPVLKNFPGIRIALSEGGTGWIPYFLERVDRTFHMHATWTMQDFGGRLPSEV HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEEEEEHHHHCCCCHHHH FREHFLTCFISDPLGVELRHRIGIDNIAWECDYPHSDSMWPGAPEELGEVMNRLAVPEPE HHHHHEEEEECCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCC INKMTYENALRWYSFDPFAHVPREHATVGALRAQAAGHDVSIRALSHRTYERGEKLAAYQ HHHHHHHHHHEEECCCCHHHCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHH AMAASAPER HHHHCCCCC >Mature Secondary Structure MRYDDMILVSIDDHIIEPPDMFADHLPERYKQDAPHVVRLPGGADAWKFRDTVIPNVALN CCCCCEEEEEECCCCCCCHHHHHHHCHHHHHCCCCCEEECCCCCCCCCHHHHCCCCHHHH AVAGRPKEEYGLEPQGLDEIRPGCYQVDERIKDMNAGGILASMNFPSFPGFAARLFATED HHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHEEEEECCC PDFSLALVRAYNDWHLDEWCGAHPGRFIPMALPVIWDAELCAAEVRRVAAKGCHSLTFTE CCCEEEEEEECCCCCCHHHHCCCCCCEEEEECCEEECHHHHHHHHHHHHHCCCCEEEECC NPAALGYPSFHDAYWNPLWQAVCDTNTVLSIHIGSSGQLTIPAPDSPPDVLITLQPMNIV CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCCCCCCCEEEEECCHHHH SAAADLLWSPVLKNFPGIRIALSEGGTGWIPYFLERVDRTFHMHATWTMQDFGGRLPSEV HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEEEEEHHHHCCCCHHHH FREHFLTCFISDPLGVELRHRIGIDNIAWECDYPHSDSMWPGAPEELGEVMNRLAVPEPE HHHHHEEEEECCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCC INKMTYENALRWYSFDPFAHVPREHATVGALRAQAAGHDVSIRALSHRTYERGEKLAAYQ HHHHHHHHHHEEECCCCHHHCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHH AMAASAPER HHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA