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The map label for this gene is yulB [H]

Identifier: 158318803

GI number: 158318803

Start: 8634145

End: 8634906

Strand: Reverse

Name: yulB [H]

Synonym: Franean1_7075

Alternate gene names: 158318803

Gene position: 8634906-8634145 (Counterclockwise)

Preceding gene: 158318807

Following gene: 158318802

Centisome position: 96.14

GC content: 69.03

Gene sequence:

>762_bases
ATGTACGCAGAAGAACGCCAGCAGGAGATCGTGCGGCGGGCGCGCGCCGAGGGCAGGGTGGATGTCGTGGCGCTGGCCGA
GGGGTTCGGCGTGACGAGCGAGACGATCCGCAGGGATCTCACCCTGCTCGAGCGGGCGGGGGTGCTGCGACGGGTGCACG
GCGGGGCGATCCCGATCGAGCGGATGGGCTTCGAGCCCGCCCTTGCCGCGAGGGACGCAGTCATGACCGCGGAGAAGGAG
CGGATAGTCAAGGCAGCGGTAGCCGAGTTACCCGAGGAAGGTTCGGTCATCATCGATGCCGGGAGCACGACGGGCCGGCT
TGCGGAGGCGCTGCCCGCCGACCGGGAGCTCACCGTGGTGGTGAACGCCCCGCCGTTGGCGACGATGCTGGCCGGGCGAC
CTAATCTTCATGTGATCATGCTCGGCGGTCGGGTGCGCGCGCGAACGCTGGCCACCGTGGACGACTGGGCGTTACAGCCC
TTGTCGCACCTGTCTGTGGACGTTGCGTTCATGGGCACCAACGGCTGCTCGCCGGACCGGGGGTTCACGACTCCTGATCC
GGCTGAGGCGGCGGTGAAGCGGGCAATGATCGCCTCTGCCCGGCGGGCTGTCGTGCTCGCCGACCATACCAAGGTCGGCA
ATGACTACCTGGCCCGGTTCGCGACCCTCGCCGAGGTCGACATGTTCATCACGGACACCGGGCTCGACGCGCGGGTAGCC
GCCGAGATCGAGGACGGCGGGCCCCGCGTGGTACAGGCATGA

Upstream 100 bases:

>100_bases
CACTATAGGCCCCCGCTCTGGCCTGATTCCGATGTTGACGGACAACACAAGCAGGCGTATACAGACGTGACAACGGGTCG
AAGCGGCGGTGATGTCACAG

Downstream 100 bases:

>100_bases
TCGTCACGGTGACGCTGAATCCCAGCCTCGATCGCACAATCGACATCAGCGCGCTGGCGCGTGGCGCCGTCATCCGGGCG
GCGTCGGCCCGGCTGGATCC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MYAEERQQEIVRRARAEGRVDVVALAEGFGVTSETIRRDLTLLERAGVLRRVHGGAIPIERMGFEPALAARDAVMTAEKE
RIVKAAVAELPEEGSVIIDAGSTTGRLAEALPADRELTVVVNAPPLATMLAGRPNLHVIMLGGRVRARTLATVDDWALQP
LSHLSVDVAFMGTNGCSPDRGFTTPDPAEAAVKRAMIASARRAVVLADHTKVGNDYLARFATLAEVDMFITDTGLDARVA
AEIEDGGPRVVQA

Sequences:

>Translated_253_residues
MYAEERQQEIVRRARAEGRVDVVALAEGFGVTSETIRRDLTLLERAGVLRRVHGGAIPIERMGFEPALAARDAVMTAEKE
RIVKAAVAELPEEGSVIIDAGSTTGRLAEALPADRELTVVVNAPPLATMLAGRPNLHVIMLGGRVRARTLATVDDWALQP
LSHLSVDVAFMGTNGCSPDRGFTTPDPAEAAVKRAMIASARRAVVLADHTKVGNDYLARFATLAEVDMFITDTGLDARVA
AEIEDGGPRVVQA
>Mature_253_residues
MYAEERQQEIVRRARAEGRVDVVALAEGFGVTSETIRRDLTLLERAGVLRRVHGGAIPIERMGFEPALAARDAVMTAEKE
RIVKAAVAELPEEGSVIIDAGSTTGRLAEALPADRELTVVVNAPPLATMLAGRPNLHVIMLGGRVRARTLATVDDWALQP
LSHLSVDVAFMGTNGCSPDRGFTTPDPAEAAVKRAMIASARRAVVLADHTKVGNDYLARFATLAEVDMFITDTGLDARVA
AEIEDGGPRVVQA

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789059, Length=252, Percent_Identity=30.952380952381, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1789519, Length=250, Percent_Identity=31.2, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1789829, Length=232, Percent_Identity=29.3103448275862, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI226510968, Length=236, Percent_Identity=35.1694915254237, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1788069, Length=252, Percent_Identity=28.5714285714286, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1787540, Length=233, Percent_Identity=29.6137339055794, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI87082344, Length=249, Percent_Identity=24.8995983935743, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789170, Length=230, Percent_Identity=30.4347826086957, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790753, Length=234, Percent_Identity=25.6410256410256, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787063, Length=233, Percent_Identity=26.1802575107296, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1790635, Length=253, Percent_Identity=26.0869565217391, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27041; Mature: 27041

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYAEERQQEIVRRARAEGRVDVVALAEGFGVTSETIRRDLTLLERAGVLRRVHGGAIPIE
CCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
RMGFEPALAARDAVMTAEKERIVKAAVAELPEEGSVIIDAGSTTGRLAEALPADRELTVV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHCCCCCEEEEE
VNAPPLATMLAGRPNLHVIMLGGRVRARTLATVDDWALQPLSHLSVDVAFMGTNGCSPDR
EECCCHHHHHCCCCCEEEEEECCCEEEEEEEECHHHHHCCHHHCEEEEEEEECCCCCCCC
GFTTPDPAEAAVKRAMIASARRAVVLADHTKVGNDYLARFATLAEVDMFITDTGLDARVA
CCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHEEEEECCCCCEEEE
AEIEDGGPRVVQA
EEECCCCCEEECC
>Mature Secondary Structure
MYAEERQQEIVRRARAEGRVDVVALAEGFGVTSETIRRDLTLLERAGVLRRVHGGAIPIE
CCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
RMGFEPALAARDAVMTAEKERIVKAAVAELPEEGSVIIDAGSTTGRLAEALPADRELTVV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHCCCCCEEEEE
VNAPPLATMLAGRPNLHVIMLGGRVRARTLATVDDWALQPLSHLSVDVAFMGTNGCSPDR
EECCCHHHHHCCCCCEEEEEECCCEEEEEEEECHHHHHCCHHHCEEEEEEEECCCCCCCC
GFTTPDPAEAAVKRAMIASARRAVVLADHTKVGNDYLARFATLAEVDMFITDTGLDARVA
CCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHEEEEECCCCCEEEE
AEIEDGGPRVVQA
EEECCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]