| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is sacC [H]
Identifier: 158318776
GI number: 158318776
Start: 8598625
End: 8601081
Strand: Direct
Name: sacC [H]
Synonym: Franean1_7047
Alternate gene names: 158318776
Gene position: 8598625-8601081 (Clockwise)
Preceding gene: 158318775
Following gene: 158318778
Centisome position: 95.73
GC content: 64.79
Gene sequence:
>2457_bases ATGTCCATACTTGTCAGACTCATGCGTAGCAGCCTCACGCGGGTCAGGTTCACCGCGGTGACGGTCGCTCTCGCGGCGGT GTTCACCTCCCTTCTGCCGGCCGTGCCCGCCCTGGCCGGACAGGTCAGCGACTACCCCGAGTTCCCGTACCCGACGACAG ACTACACCGAGCCCTTACGCGGCCAGTTCCACTTCAGCTCGCGCGGCGGCTGGATGAACGACATCAACGCCCCGCTGTAC CACAATGGCCTCTACCACGTCTTCTATCAGCACAATCCGCACAGCCTCCTCTGGGAGACCATGCACTGGGGACATGCCAC CAGCCCCGACCTGGTGCACTGGACGCAGAAGCCGATCGCGCTGGAACCGGGTGTGCATCCGCATGACCTGTGGTCCGGGG CCGGGGTGGTCGACACCAACAACACCTCGGGTCTGCAGACCGGGAGCGAGGCACCGATCCTCGTGTTCACCGCCACCAAC GGCGTGAGCATCAACTACAGCAACGACGCCGCGAAAACGTTCCAGATCTACAACCAAGGTCAGAAGGTCGTCACACCGGC CGGCATCAGTCGTGATCCCAAGGTGTTCTGGCATGCGCCTTCCAACCGGTGGGTGATGGTGGTCTGGTCCGACGCCGGGG GGAACGGCGTCAACATCTACACCTCACCCAACCTGTTGACCTGGACGTTTCGCAGCCGGTATGCCGCCGACTGGCTGTAC GAATGTCCGGACCTGTTCTCCCTGGCCGTCGACGGCGACCCGGGGAACACGAGGTGGGTCATGACCGACGCCGGCGGCGA GTACGTCATCGGTTCCTTCGACGGTGTCACCTTCACCCCGGAGTGGACGTCGCCGCAACGGATGGACCAGGGGCACAACA CCTTCGAGGGCACCTTCTATGCCGGGCTGACCTTCAACCACATGCCGGACAACCGGATCGTGCAGATGGCCTGGATGAGA TCGAACCAGGGCAGCGTCTGGACCGGCAATGCCTCCTTCCCCGCGGAACTGGGCCTGCGCGCCTATCCCGAGGGGATACG CCTGACCCGCAATCCCGTCGGCGAGATCGCGTCCCTGCGCGTCGATTCTCAATCATGGGTAAACCGCGACATCACCCCCG ATCCGGCCAGCGATCCCCTCACCAGCACCTTCGCCGACACCTACGAGATCATCGCCGAGTTCGACACGGCCACCGCCACA GCGTCACGGTTCGGCTTCCGATTACACACCCGCAGTGACGGAACCTTCGACCGTGCCGTCACCTACGACCGGACTGCGCA GACGCTCTACGGCGCACCGCTGGCGCCGATCAACGGACGGGTCAGGATGCGGCTACTGGTGGACCGCGGGCAACTGGAGA TCTTCGGCAACGACGGCAAGCTGTCCTGGACCGACAACGTCAACTTCAACTCGGCACCGTCGAGCCAGGGTGTGCAGCTG TATGCCGAAGGCGGCAACGTCCAGCTGGTGTCGCTCCAGTTCCACCGGCTGCAGTCAGCGTGGGGTTCTGGGGAGTCCAC CCTGGAGAGCAACCTGGCCGGCCCCTGGCACCCGGCCGGCGGGACGTGGGTCGACACCACCACGGGCAAGCAGGGCACCG CGGGTGGGGACGGTTTCTACCTGAGCAACCAGACCGGAGCCGACTTCACCTACGAGGGTGATCTCCGCCTCGACACCGCC GTGGCAGCCGGGATCACCTTCCGGGCCAACAGCGACGCCACCCAGCAGTACACCGCCAACGTCGACGCCAACGGACTGGT GAAACTGTGGCGCCCCGGCCGGGACATCGGGATCTTCTACACCCCGATCTCCCAAGGCCGCACCTACCACCTGAAGGTGG TGACCAGCGGCTCCATCATCAGGGTCTATCTGGACCACCGCCCCACCCCCGTGATCGACGCCGTCGACACCGCCTACACC AGCGGGTACTTCGGGACCAACGTCTTCGGCGGGACCGGCGTCGTGCAGAATGCCAACGTCAACGCCACCGGGTTCGTCTC CAACCTGGGAGCAACCTGGCGGCCGGCGACCGGGCTGTGGACCGTCCCCGGTGCCGGTGTCAAGGGTCGGGTCGCCGGGG ACGGCTTCTACCTCAGCGACCAGACCGGGACCAACTTCACCTATGAGGGTGACGTCAAGGTGATCAACGGGGTCGCCGCC GCGCTGACCTTCCGGTCGAACGCCGACGCGACCGGGCACTACACCGCCAACGTCGACACCAACGGCCTGGTGAAACTGTG GCGCCCCGGCTCGGTGATAGGCGTCTTCAACACACCGATCGTCGAAGGCCGGACGTACCACCTGAAGGTGGTGGCCAACG GTCCCAACATCAGAGTCTACTTCGACGGAGGAGCGACGCCGGTCATAGACGCCGTTGACAGCACTTACAGCAGTGGGTTC TTCGGTGTCAACGTCTTCAGCGGGGTCGGCGTGATCCAGAACGTCGTAACAAGCTGA
Upstream 100 bases:
>100_bases GCACGAAGGTTCTGGACAGCGGGACGGCGTCCGAGTTCGTTTCGTACACCTCCAACTACACCTTCCGCCCGACGCCGTGA CACCGTAGGAGAGAAAAAGG
Downstream 100 bases:
>100_bases ACACAGAAGACATCCGCGCGTAGCCGAGCTCGGGGCCGGCCAGGGTCATCACCTCCCTGGCCGGCCCTGCGATGAGGATG CCCGACCCGAGGGCGACCCG
Product: glycosyl hydrolase family 32 protein
Products: NA
Alternate protein names: Beta-D-fructofuranosidase; Exo-beta-D-fructosidase; Exo-levanase [H]
Number of amino acids: Translated: 818; Mature: 817
Protein sequence:
>818_residues MSILVRLMRSSLTRVRFTAVTVALAAVFTSLLPAVPALAGQVSDYPEFPYPTTDYTEPLRGQFHFSSRGGWMNDINAPLY HNGLYHVFYQHNPHSLLWETMHWGHATSPDLVHWTQKPIALEPGVHPHDLWSGAGVVDTNNTSGLQTGSEAPILVFTATN GVSINYSNDAAKTFQIYNQGQKVVTPAGISRDPKVFWHAPSNRWVMVVWSDAGGNGVNIYTSPNLLTWTFRSRYAADWLY ECPDLFSLAVDGDPGNTRWVMTDAGGEYVIGSFDGVTFTPEWTSPQRMDQGHNTFEGTFYAGLTFNHMPDNRIVQMAWMR SNQGSVWTGNASFPAELGLRAYPEGIRLTRNPVGEIASLRVDSQSWVNRDITPDPASDPLTSTFADTYEIIAEFDTATAT ASRFGFRLHTRSDGTFDRAVTYDRTAQTLYGAPLAPINGRVRMRLLVDRGQLEIFGNDGKLSWTDNVNFNSAPSSQGVQL YAEGGNVQLVSLQFHRLQSAWGSGESTLESNLAGPWHPAGGTWVDTTTGKQGTAGGDGFYLSNQTGADFTYEGDLRLDTA VAAGITFRANSDATQQYTANVDANGLVKLWRPGRDIGIFYTPISQGRTYHLKVVTSGSIIRVYLDHRPTPVIDAVDTAYT SGYFGTNVFGGTGVVQNANVNATGFVSNLGATWRPATGLWTVPGAGVKGRVAGDGFYLSDQTGTNFTYEGDVKVINGVAA ALTFRSNADATGHYTANVDTNGLVKLWRPGSVIGVFNTPIVEGRTYHLKVVANGPNIRVYFDGGATPVIDAVDSTYSSGF FGVNVFSGVGVIQNVVTS
Sequences:
>Translated_818_residues MSILVRLMRSSLTRVRFTAVTVALAAVFTSLLPAVPALAGQVSDYPEFPYPTTDYTEPLRGQFHFSSRGGWMNDINAPLY HNGLYHVFYQHNPHSLLWETMHWGHATSPDLVHWTQKPIALEPGVHPHDLWSGAGVVDTNNTSGLQTGSEAPILVFTATN GVSINYSNDAAKTFQIYNQGQKVVTPAGISRDPKVFWHAPSNRWVMVVWSDAGGNGVNIYTSPNLLTWTFRSRYAADWLY ECPDLFSLAVDGDPGNTRWVMTDAGGEYVIGSFDGVTFTPEWTSPQRMDQGHNTFEGTFYAGLTFNHMPDNRIVQMAWMR SNQGSVWTGNASFPAELGLRAYPEGIRLTRNPVGEIASLRVDSQSWVNRDITPDPASDPLTSTFADTYEIIAEFDTATAT ASRFGFRLHTRSDGTFDRAVTYDRTAQTLYGAPLAPINGRVRMRLLVDRGQLEIFGNDGKLSWTDNVNFNSAPSSQGVQL YAEGGNVQLVSLQFHRLQSAWGSGESTLESNLAGPWHPAGGTWVDTTTGKQGTAGGDGFYLSNQTGADFTYEGDLRLDTA VAAGITFRANSDATQQYTANVDANGLVKLWRPGRDIGIFYTPISQGRTYHLKVVTSGSIIRVYLDHRPTPVIDAVDTAYT SGYFGTNVFGGTGVVQNANVNATGFVSNLGATWRPATGLWTVPGAGVKGRVAGDGFYLSDQTGTNFTYEGDVKVINGVAA ALTFRSNADATGHYTANVDTNGLVKLWRPGSVIGVFNTPIVEGRTYHLKVVANGPNIRVYFDGGATPVIDAVDSTYSSGF FGVNVFSGVGVIQNVVTS >Mature_817_residues SILVRLMRSSLTRVRFTAVTVALAAVFTSLLPAVPALAGQVSDYPEFPYPTTDYTEPLRGQFHFSSRGGWMNDINAPLYH NGLYHVFYQHNPHSLLWETMHWGHATSPDLVHWTQKPIALEPGVHPHDLWSGAGVVDTNNTSGLQTGSEAPILVFTATNG VSINYSNDAAKTFQIYNQGQKVVTPAGISRDPKVFWHAPSNRWVMVVWSDAGGNGVNIYTSPNLLTWTFRSRYAADWLYE CPDLFSLAVDGDPGNTRWVMTDAGGEYVIGSFDGVTFTPEWTSPQRMDQGHNTFEGTFYAGLTFNHMPDNRIVQMAWMRS NQGSVWTGNASFPAELGLRAYPEGIRLTRNPVGEIASLRVDSQSWVNRDITPDPASDPLTSTFADTYEIIAEFDTATATA SRFGFRLHTRSDGTFDRAVTYDRTAQTLYGAPLAPINGRVRMRLLVDRGQLEIFGNDGKLSWTDNVNFNSAPSSQGVQLY AEGGNVQLVSLQFHRLQSAWGSGESTLESNLAGPWHPAGGTWVDTTTGKQGTAGGDGFYLSNQTGADFTYEGDLRLDTAV AAGITFRANSDATQQYTANVDANGLVKLWRPGRDIGIFYTPISQGRTYHLKVVTSGSIIRVYLDHRPTPVIDAVDTAYTS GYFGTNVFGGTGVVQNANVNATGFVSNLGATWRPATGLWTVPGAGVKGRVAGDGFYLSDQTGTNFTYEGDVKVINGVAAA LTFRSNADATGHYTANVDTNGLVKLWRPGSVIGVFNTPIVEGRTYHLKVVANGPNIRVYFDGGATPVIDAVDSTYSSGFF GVNVFSGVGVIQNVVTS
Specific function: Exo-fructosidase that can hydrolyze both levan and inulin, leading to the production of free fructose. Is also able to hydrolyze sucrose and to a small extent raffinose, but not melezitose, stachylose, cellobiose, maltose, and lactose [H]
COG id: COG1621
COG function: function code G; Beta-fructosidases (levanase/invertase)
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 32 family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322029, Length=331, Percent_Identity=31.1178247734139, Blast_Score=145, Evalue=3e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008985 - InterPro: IPR010496 - InterPro: IPR001362 - InterPro: IPR018053 - InterPro: IPR013189 - InterPro: IPR013148 - InterPro: IPR011040 [H]
Pfam domain/function: PF06439 DUF1080; PF08244 Glyco_hydro_32C; PF00251 Glyco_hydro_32N [H]
EC number: =3.2.1.80 [H]
Molecular weight: Translated: 88861; Mature: 88729
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSILVRLMRSSLTRVRFTAVTVALAAVFTSLLPAVPALAGQVSDYPEFPYPTTDYTEPLR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC GQFHFSSRGGWMNDINAPLYHNGLYHVFYQHNPHSLLWETMHWGHATSPDLVHWTQKPIA CEEEECCCCCCCCCCCCCEEECCEEEEEEEECCCHHHHHHHCCCCCCCCCEEEECCCCEE LEPGVHPHDLWSGAGVVDTNNTSGLQTGSEAPILVFTATNGVSINYSNDAAKTFQIYNQG ECCCCCHHHHCCCCCEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCEEEEEECCC QKVVTPAGISRDPKVFWHAPSNRWVMVVWSDAGGNGVNIYTSPNLLTWTFRSRYAADWLY CEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCHHHHHHH ECPDLFSLAVDGDPGNTRWVMTDAGGEYVIGSFDGVTFTPEWTSPQRMDQGHNTFEGTFY CCCCEEEEEEECCCCCEEEEEEECCCCEEEECCCCEEECCCCCCHHHHHCCCCCCCEEEE AGLTFNHMPDNRIVQMAWMRSNQGSVWTGNASFPAELGLRAYPEGIRLTRNPVGEIASLR EEEEECCCCCCCEEEEEEEECCCCCEEECCCCCHHHCCCEECCCCCEEECCCCCCEEEEE VDSQSWVNRDITPDPASDPLTSTFADTYEIIAEFDTATATASRFGFRLHTRSDGTFDRAV ECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCEEEEEECCCCCCCCEE TYDRTAQTLYGAPLAPINGRVRMRLLVDRGQLEIFGNDGKLSWTDNVNFNSAPSSQGVQL EECCHHHHHCCCCCCCCCCCEEEEEEEECCEEEEEECCCEEEEECCCCCCCCCCCCCEEE YAEGGNVQLVSLQFHRLQSAWGSGESTLESNLAGPWHPAGGTWVDTTTGKQGTAGGDGFY EECCCCEEEEEEEHHHHHHHCCCCCHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCEE LSNQTGADFTYEGDLRLDTAVAAGITFRANSDATQQYTANVDANGLVKLWRPGRDIGIFY EECCCCCCEEEECCEEEEEEEEEEEEEECCCCCCEEEEECCCCCCEEEEECCCCCEEEEE TPISQGRTYHLKVVTSGSIIRVYLDHRPTPVIDAVDTAYTSGYFGTNVFGGTGVVQNANV EECCCCCEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEECCCC NATGFVSNLGATWRPATGLWTVPGAGVKGRVAGDGFYLSDQTGTNFTYEGDVKVINGVAA CCEEEHHHCCCCCCCCCCEEECCCCCCCCEEECCCEEEECCCCCCEEEECCEEEECCEEE ALTFRSNADATGHYTANVDTNGLVKLWRPGSVIGVFNTPIVEGRTYHLKVVANGPNIRVY EEEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCEECCCEEEEEEEECCCEEEEE FDGGATPVIDAVDSTYSSGFFGVNVFSGVGVIQNVVTS ECCCCCCCHHHHCCCCCCCEEEEEHHHHHHHHHHHHCC >Mature Secondary Structure SILVRLMRSSLTRVRFTAVTVALAAVFTSLLPAVPALAGQVSDYPEFPYPTTDYTEPLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC GQFHFSSRGGWMNDINAPLYHNGLYHVFYQHNPHSLLWETMHWGHATSPDLVHWTQKPIA CEEEECCCCCCCCCCCCCEEECCEEEEEEEECCCHHHHHHHCCCCCCCCCEEEECCCCEE LEPGVHPHDLWSGAGVVDTNNTSGLQTGSEAPILVFTATNGVSINYSNDAAKTFQIYNQG ECCCCCHHHHCCCCCEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCEEEEEECCC QKVVTPAGISRDPKVFWHAPSNRWVMVVWSDAGGNGVNIYTSPNLLTWTFRSRYAADWLY CEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCHHHHHHH ECPDLFSLAVDGDPGNTRWVMTDAGGEYVIGSFDGVTFTPEWTSPQRMDQGHNTFEGTFY CCCCEEEEEEECCCCCEEEEEEECCCCEEEECCCCEEECCCCCCHHHHHCCCCCCCEEEE AGLTFNHMPDNRIVQMAWMRSNQGSVWTGNASFPAELGLRAYPEGIRLTRNPVGEIASLR EEEEECCCCCCCEEEEEEEECCCCCEEECCCCCHHHCCCEECCCCCEEECCCCCCEEEEE VDSQSWVNRDITPDPASDPLTSTFADTYEIIAEFDTATATASRFGFRLHTRSDGTFDRAV ECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCEEEEEECCCCCCCCEE TYDRTAQTLYGAPLAPINGRVRMRLLVDRGQLEIFGNDGKLSWTDNVNFNSAPSSQGVQL EECCHHHHHCCCCCCCCCCCEEEEEEEECCEEEEEECCCEEEEECCCCCCCCCCCCCEEE YAEGGNVQLVSLQFHRLQSAWGSGESTLESNLAGPWHPAGGTWVDTTTGKQGTAGGDGFY EECCCCEEEEEEEHHHHHHHCCCCCHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCEE LSNQTGADFTYEGDLRLDTAVAAGITFRANSDATQQYTANVDANGLVKLWRPGRDIGIFY EECCCCCCEEEECCEEEEEEEEEEEEEECCCCCCEEEEECCCCCCEEEEECCCCCEEEEE TPISQGRTYHLKVVTSGSIIRVYLDHRPTPVIDAVDTAYTSGYFGTNVFGGTGVVQNANV EECCCCCEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEECCCC NATGFVSNLGATWRPATGLWTVPGAGVKGRVAGDGFYLSDQTGTNFTYEGDVKVINGVAA CCEEEHHHCCCCCCCCCCEEECCCCCCCCEEECCCEEEECCCCCCEEEECCEEEECCEEE ALTFRSNADATGHYTANVDTNGLVKLWRPGSVIGVFNTPIVEGRTYHLKVVANGPNIRVY EEEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCEECCCEEEEEEEECCCEEEEE FDGGATPVIDAVDSTYSSGFFGVNVFSGVGVIQNVVTS ECCCCCCCHHHHCCCCCCCEEEEEHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3112519; 3120151; 9141695; 9384377; 2117666 [H]