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The map label for this gene is rbsR [H]

Identifier: 158318769

GI number: 158318769

Start: 8590899

End: 8591960

Strand: Reverse

Name: rbsR [H]

Synonym: Franean1_7040

Alternate gene names: 158318769

Gene position: 8591960-8590899 (Counterclockwise)

Preceding gene: 158318770

Following gene: 158318768

Centisome position: 95.66

GC content: 66.01

Gene sequence:

>1062_bases
GTGACTCAGATAGGGATCGCCGACGTGGCGGCCGCCGCAGGCGTCTCCCGAACGACCGTTTCGCTCGTGCTCAACAACGT
CGAGGCACGCATCTCCGACGAGACGAGAGAACGTGTGCGCCGGGTCGCGGCGGAGATCGGGTACGTGCCCAATCCGGTCG
CACGCAGCCTCCGTACGCGTCGCACGCGGACGATCGGCCTGATCTCTGACCGGATCGCGACGACACCGTTCGCCGGCCGC
CTGCTCGCCGGCGCGCAGGATGTGGCACGCGAGCATGAGTACCTCGTGTTCCTCGTCAACACCGACGGCGACTCCGAGAT
CGAGCGGGAAGCCATCCGTGCGCTCTCAGCCCACCAGGTCGACAGATTTGTTTACGCCTGCATGTGGCATCGAGAGATTT
CTGTTCCCGCAGGGCTTCCAGAGTCGACCGTGTTTCTCGACTGCCGGCCTCTTGCGGACGGCTACTCCGCTGTCGTGCCA
GACGACCATGCCGGCGGTGTCGCCGCGGTCCGAGAGCTGGTCATGGCCGGCCATCGCCGGATTGCCTATGTCGACACGAC
GGAGAAGGACCGTCCCGTTGCCGCTGAGCTGAGACACCGCGGCTATCTCGAGGTGCTGCGCGAGGCCGGCATCGGCGCCG
ACCCACGGCTTCATGTCACGTTCGAGACCTCGGCACTCGGCGGACGGCGGGCAACCGAGGCCCTTCTCGACCTGCCTGTC
GACGTTCGGCCCACTGCCGTCTTCTTCTTCAACGACCGGATGGCCATGGGCGCCTACGTTGCAGCTCATACCCGAGGGCT
CGAGATCCCTCGGGATCTTTCGGTGTTCGGTTACGACGACCAGCAACTGGTGGCGGCCGAACTCGACCCGCCACTGTCCA
CCATCGCCTTACCGCACTACGAGATGGGTCGCTGGGCGATGGAGATCGTGCTCGGGGTGCGGGAGGCCCCGAACGACACG
TTCCTCATGCCATGCCCGGTCATCCGCCGGGCATCCGTGGGTCCGCCGCCGGCCTCGACTTCCACATCCAGTCGGCGGCG
GACCTTTTTAGCAACCGAGTGA

Upstream 100 bases:

>100_bases
TTCACGGGGCGAGCATGCTGTCGCTTGACAAAGTTATGCAAGCAGGGCGTACTAATCCTTAGTAATTTCCGATAAAACGA
TTTATCTTGGGATGTGGCGT

Downstream 100 bases:

>100_bases
CCGCATCAGCGGTCCCCGATCGGTTCGCGACGTGGCTGCCGCGCATCGTGAAAGGAATTCACCATGAAGCGTAAATCCTT
TACCGGAATATTAGCAGTGA

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MTQIGIADVAAAAGVSRTTVSLVLNNVEARISDETRERVRRVAAEIGYVPNPVARSLRTRRTRTIGLISDRIATTPFAGR
LLAGAQDVAREHEYLVFLVNTDGDSEIEREAIRALSAHQVDRFVYACMWHREISVPAGLPESTVFLDCRPLADGYSAVVP
DDHAGGVAAVRELVMAGHRRIAYVDTTEKDRPVAAELRHRGYLEVLREAGIGADPRLHVTFETSALGGRRATEALLDLPV
DVRPTAVFFFNDRMAMGAYVAAHTRGLEIPRDLSVFGYDDQQLVAAELDPPLSTIALPHYEMGRWAMEIVLGVREAPNDT
FLMPCPVIRRASVGPPPASTSTSSRRRTFLATE

Sequences:

>Translated_353_residues
MTQIGIADVAAAAGVSRTTVSLVLNNVEARISDETRERVRRVAAEIGYVPNPVARSLRTRRTRTIGLISDRIATTPFAGR
LLAGAQDVAREHEYLVFLVNTDGDSEIEREAIRALSAHQVDRFVYACMWHREISVPAGLPESTVFLDCRPLADGYSAVVP
DDHAGGVAAVRELVMAGHRRIAYVDTTEKDRPVAAELRHRGYLEVLREAGIGADPRLHVTFETSALGGRRATEALLDLPV
DVRPTAVFFFNDRMAMGAYVAAHTRGLEIPRDLSVFGYDDQQLVAAELDPPLSTIALPHYEMGRWAMEIVLGVREAPNDT
FLMPCPVIRRASVGPPPASTSTSSRRRTFLATE
>Mature_352_residues
TQIGIADVAAAAGVSRTTVSLVLNNVEARISDETRERVRRVAAEIGYVPNPVARSLRTRRTRTIGLISDRIATTPFAGRL
LAGAQDVAREHEYLVFLVNTDGDSEIEREAIRALSAHQVDRFVYACMWHREISVPAGLPESTVFLDCRPLADGYSAVVPD
DHAGGVAAVRELVMAGHRRIAYVDTTEKDRPVAAELRHRGYLEVLREAGIGADPRLHVTFETSALGGRRATEALLDLPVD
VRPTAVFFFNDRMAMGAYVAAHTRGLEIPRDLSVFGYDDQQLVAAELDPPLSTIALPHYEMGRWAMEIVLGVREAPNDTF
LMPCPVIRRASVGPPPASTSTSSRRRTFLATE

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=333, Percent_Identity=33.6336336336336, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1790194, Length=316, Percent_Identity=34.1772151898734, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1788474, Length=317, Percent_Identity=32.807570977918, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1787948, Length=340, Percent_Identity=31.7647058823529, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1789202, Length=342, Percent_Identity=31.2865497076023, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789068, Length=341, Percent_Identity=31.3782991202346, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1786540, Length=353, Percent_Identity=28.6118980169972, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790715, Length=316, Percent_Identity=24.3670886075949, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI48994940, Length=311, Percent_Identity=25.08038585209, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787906, Length=319, Percent_Identity=30.0940438871473, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1787580, Length=325, Percent_Identity=29.2307692307692, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786268, Length=321, Percent_Identity=26.4797507788162, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 38693; Mature: 38562

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQIGIADVAAAAGVSRTTVSLVLNNVEARISDETRERVRRVAAEIGYVPNPVARSLRTR
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RTRTIGLISDRIATTPFAGRLLAGAQDVAREHEYLVFLVNTDGDSEIEREAIRALSAHQV
HHHEEEEEHHHHHCCCCHHHHHHCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH
DRFVYACMWHREISVPAGLPESTVFLDCRPLADGYSAVVPDDHAGGVAAVRELVMAGHRR
HHHHHHHHHHCEECCCCCCCCCEEEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHCCCE
IAYVDTTEKDRPVAAELRHRGYLEVLREAGIGADPRLHVTFETSALGGRRATEALLDLPV
EEEEECCCCCCCHHHHHHHCHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCC
DVRPTAVFFFNDRMAMGAYVAAHTRGLEIPRDLSVFGYDDQQLVAAELDPPLSTIALPHY
CCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCEEECCCCCEEEEECCCCCHHHEECCCH
EMGRWAMEIVLGVREAPNDTFLMPCPVIRRASVGPPPASTSTSSRRRTFLATE
HHHHHHHHHHHHHHCCCCCCEEECCCHHHCCCCCCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure 
TQIGIADVAAAAGVSRTTVSLVLNNVEARISDETRERVRRVAAEIGYVPNPVARSLRTR
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RTRTIGLISDRIATTPFAGRLLAGAQDVAREHEYLVFLVNTDGDSEIEREAIRALSAHQV
HHHEEEEEHHHHHCCCCHHHHHHCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH
DRFVYACMWHREISVPAGLPESTVFLDCRPLADGYSAVVPDDHAGGVAAVRELVMAGHRR
HHHHHHHHHHCEECCCCCCCCCEEEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHCCCE
IAYVDTTEKDRPVAAELRHRGYLEVLREAGIGADPRLHVTFETSALGGRRATEALLDLPV
EEEEECCCCCCCHHHHHHHCHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCC
DVRPTAVFFFNDRMAMGAYVAAHTRGLEIPRDLSVFGYDDQQLVAAELDPPLSTIALPHY
CCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCEEECCCCCEEEEECCCCCHHHEECCCH
EMGRWAMEIVLGVREAPNDTFLMPCPVIRRASVGPPPASTSTSSRRRTFLATE
HHHHHHHHHHHHHHCCCCCCEEECCCHHHCCCCCCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]