| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is yesP [H]
Identifier: 158318767
GI number: 158318767
Start: 8588555
End: 8589484
Strand: Reverse
Name: yesP [H]
Synonym: Franean1_7038
Alternate gene names: 158318767
Gene position: 8589484-8588555 (Counterclockwise)
Preceding gene: 158318768
Following gene: 158318766
Centisome position: 95.63
GC content: 63.01
Gene sequence:
>930_bases ATGACGTCCTCCACCCATGACGTGCCCCCGATCCGGCGGGGACGCCCTTCGGTGACCGCTCGACGGGAACGGCGCGCCGC CGTCGTGATGGCCGCGCCTGCGGTCATCCTGCTCGTGCTGTTCCTGATCGTTCCGGTGCTGCTCGGGTTAGTCCTGTCAT TCACCAATGCGCGTCTCATCTCGCCGAACCCGCCCCGGTTCGTCGGGCTCCACAACTTCATCCGAGCCTTTACCGCCGAC GACACCTTCCTGCGGTCCGCCTGGAACACCTTCGTGTTCGCGCTCGTCGTCGTCCCGGTACAGGCTGGTCTCGGCCTCCT GCTCGCCGTGCTCGTGAATCAGAAGCTCCGGGGAGCGACGCTCTTCCGCATCATCTTCTTCATTCCGGTCGTGACCTCGA TCGTCGTCGTGTCGATCCTCTGGAAGTTCCTGTACCAGCAGAACGGGCTCATCAACTCGTTCATCGACATGGCTACCTTC GGGGCATGGAACGGGACGGCGTGGCTCAACAACCCGAGCACCGCGCTCGGCGCGATCATCGTGCTCTCGGTCTGGCAGGG TGTCGGCTTCCACATGGTGATCTGGCTGTCCGGTCTCCAGGCTATCCCCGAGGAGCTGTACGAGGCGGCACGGATGGACG GTGCCGGAACATGGCAGCAGTTCAAGAACGTAACCTGGCCGGGCCTGCGCCCCATCATGGCATTTGTTCTCGTCACCATC ACGATCGCAGCGCTCGGCCTCTTCGTGCAGATCGACGTGATAACTCAGGGAGGACCCGTCGATGCCACCTCGACGGTCGT CTACCACGCGGTCCGCAAAGGCTATCAGGAGCAGGAAATCGGCTACGGATCCACCATCTCCCTTCTCTTCTTCGTCGCCG TGCTTGTCATCGCGCTCGTCCAGCGGCGCCTCACCAGAGAGAAGGACTGA
Upstream 100 bases:
>100_bases GAGAACATCACGGCCAACGACAACTACGGCTCCTGATCATCTCGTTCCATCCAGGTGGGGGCCGTGCACACGGCCCCCAC CCCTCACCCAGAGGTCGACG
Downstream 100 bases:
>100_bases ACATGACCACCATCGCACGGCCCCATACGCCGGGGAAAACCCGGGTGATCGGGGTGCGCACGCTGAAACGGCGTCGCATG ATCTGGTCCTATCTGGCGAT
Product: binding-protein-dependent transport systems inner membrane component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 309; Mature: 308
Protein sequence:
>309_residues MTSSTHDVPPIRRGRPSVTARRERRAAVVMAAPAVILLVLFLIVPVLLGLVLSFTNARLISPNPPRFVGLHNFIRAFTAD DTFLRSAWNTFVFALVVVPVQAGLGLLLAVLVNQKLRGATLFRIIFFIPVVTSIVVVSILWKFLYQQNGLINSFIDMATF GAWNGTAWLNNPSTALGAIIVLSVWQGVGFHMVIWLSGLQAIPEELYEAARMDGAGTWQQFKNVTWPGLRPIMAFVLVTI TIAALGLFVQIDVITQGGPVDATSTVVYHAVRKGYQEQEIGYGSTISLLFFVAVLVIALVQRRLTREKD
Sequences:
>Translated_309_residues MTSSTHDVPPIRRGRPSVTARRERRAAVVMAAPAVILLVLFLIVPVLLGLVLSFTNARLISPNPPRFVGLHNFIRAFTAD DTFLRSAWNTFVFALVVVPVQAGLGLLLAVLVNQKLRGATLFRIIFFIPVVTSIVVVSILWKFLYQQNGLINSFIDMATF GAWNGTAWLNNPSTALGAIIVLSVWQGVGFHMVIWLSGLQAIPEELYEAARMDGAGTWQQFKNVTWPGLRPIMAFVLVTI TIAALGLFVQIDVITQGGPVDATSTVVYHAVRKGYQEQEIGYGSTISLLFFVAVLVIALVQRRLTREKD >Mature_308_residues TSSTHDVPPIRRGRPSVTARRERRAAVVMAAPAVILLVLFLIVPVLLGLVLSFTNARLISPNPPRFVGLHNFIRAFTADD TFLRSAWNTFVFALVVVPVQAGLGLLLAVLVNQKLRGATLFRIIFFIPVVTSIVVVSILWKFLYQQNGLINSFIDMATFG AWNGTAWLNNPSTALGAIIVLSVWQGVGFHMVIWLSGLQAIPEELYEAARMDGAGTWQQFKNVTWPGLRPIMAFVLVTIT IAALGLFVQIDVITQGGPVDATSTVVYHAVRKGYQEQEIGYGSTISLLFFVAVLVIALVQRRLTREKD
Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1789861, Length=294, Percent_Identity=31.9727891156463, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI1790465, Length=266, Percent_Identity=31.203007518797, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1787570, Length=247, Percent_Identity=27.1255060728745, Blast_Score=104, Evalue=7e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 34000; Mature: 33868
Theoretical pI: Translated: 10.98; Mature: 10.98
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSTHDVPPIRRGRPSVTARRERRAAVVMAAPAVILLVLFLIVPVLLGLVLSFTNARLI CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE SPNPPRFVGLHNFIRAFTADDTFLRSAWNTFVFALVVVPVQAGLGLLLAVLVNQKLRGAT CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LFRIIFFIPVVTSIVVVSILWKFLYQQNGLINSFIDMATFGAWNGTAWLNNPSTALGAII HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEECCCCHHHHHHHH VLSVWQGVGFHMVIWLSGLQAIPEELYEAARMDGAGTWQQFKNVTWPGLRPIMAFVLVTI HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHH TIAALGLFVQIDVITQGGPVDATSTVVYHAVRKGYQEQEIGYGSTISLLFFVAVLVIALV HHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHH QRRLTREKD HHHHHCCCC >Mature Secondary Structure TSSTHDVPPIRRGRPSVTARRERRAAVVMAAPAVILLVLFLIVPVLLGLVLSFTNARLI CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE SPNPPRFVGLHNFIRAFTADDTFLRSAWNTFVFALVVVPVQAGLGLLLAVLVNQKLRGAT CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LFRIIFFIPVVTSIVVVSILWKFLYQQNGLINSFIDMATFGAWNGTAWLNNPSTALGAII HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEECCCCHHHHHHHH VLSVWQGVGFHMVIWLSGLQAIPEELYEAARMDGAGTWQQFKNVTWPGLRPIMAFVLVTI HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHH TIAALGLFVQIDVITQGGPVDATSTVVYHAVRKGYQEQEIGYGSTISLLFFVAVLVIALV HHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHH QRRLTREKD HHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]