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The map label for this gene is rbsB [H]

Identifier: 158318761

GI number: 158318761

Start: 8579736

End: 8580827

Strand: Reverse

Name: rbsB [H]

Synonym: Franean1_7032

Alternate gene names: 158318761

Gene position: 8580827-8579736 (Counterclockwise)

Preceding gene: 158318762

Following gene: 158318760

Centisome position: 95.53

GC content: 66.12

Gene sequence:

>1092_bases
ATGTCGGACCAGGAAGGGATGCGGTGGACGGCATCCGGGCGGGTATCTGGATCGCCTCGCCGTCGCGCCATCGCAGCGCT
GGTGCTGGTGCTCGCCGCTGCGCTGGTCCTGTTCCGGTGCGGCGGCTCCTCGGTCCAGGTCACGGATGGCCGGCAGGGCT
CCGGTGGCAACCCGACTGTTGGGCTGATCACGAAGTCTTACACTAACCCGTTCTTCGTGAAGATGCGCGACGGCGCGCAG
CAGGCCGCGCGGGAGCAGAAGGTTGAGCTGTTGACCGCCACCGGCAGGTTCGACGGCGACTATGCCAGTCAAGTCAGCGC
CATCGAGAACATGGTAGCGGCCGGGGCGCGGGGCATCCTCATCACACCCAATGACAGCAAGGCGATCGTCCCGGCGATCG
AGCAGGCCCGGCACCGTGGTGTTCTCGTCATCGCTCTAGACGTGCCCACCGACCCGGAGAGCGCCGTCGACGCGCTGTTT
AGCACCGACAACTTCAAGGCCGGCATACTGATCGGCGAGTACGCCAGGGCCGCTATGGGCGACACGCCGGCCAGGATCGC
AACCATGGACGTCTCTTCGCACATCACGGGCGGAGGCCTGCTGCGACACAACGGTTTCCTCGTCGGCTTCGGCGCCTTGG
ACGTGACTGTCAGTGAGACTCAGCAGGCCACTCCGCCGAGCGTGGTGTGCAGCCGGGATTCCAAGGGTGACCAGGCCAAG
GGGCGGACGGCGATGGCGGACTGTCTGCGGACGGACCCGGACATCAACCTCGTGTACGCCGTGAACGAACCGGCCGCGTT
CGGCGCGCGGACCGCCCTGGACGCGGCCGGAAAGGCAGACGTCATGATCGTCTCCATCGACGGCGGATGCACCGGCGTCC
GGGCGGTCAGGGACGGCAAGATCGCTGCTACCTCACAGCAGTACCCGCTGAAGATGGCCGAGCAGGGAGTGGCCGCCGTG
GTCGACTACGTCAAGGACGGAACGAAAGTATCCGGATACGTCGACACCGGCACCACCCTGATCGCCGACGATCGTCAGCC
TGGAATCCCTTCGGAAGGCGTCGAGTACGGTCTGGCGAATTGCTGGGGCTGA

Upstream 100 bases:

>100_bases
CTTTCCAGCCCTGAGGCATCCGGTCCGCGACGGTAGCCGGGGTCCGACGTGGGTACGAGCCTGCAGATGGCCGTCGCGGC
ATGAAGGGCGGTTTGACGAC

Downstream 100 bases:

>100_bases
CCGGTCACTGGTGACCTTCCTTGGGTATTCAATCGGCTCGGACAAGATCTGCCATCCGACGGTGGAAATTATCCGTGTGC
GGCGGATGTAATCTTAGCGC

Product: periplasmic binding protein/LacI transcriptional regulator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MSDQEGMRWTASGRVSGSPRRRAIAALVLVLAAALVLFRCGGSSVQVTDGRQGSGGNPTVGLITKSYTNPFFVKMRDGAQ
QAAREQKVELLTATGRFDGDYASQVSAIENMVAAGARGILITPNDSKAIVPAIEQARHRGVLVIALDVPTDPESAVDALF
STDNFKAGILIGEYARAAMGDTPARIATMDVSSHITGGGLLRHNGFLVGFGALDVTVSETQQATPPSVVCSRDSKGDQAK
GRTAMADCLRTDPDINLVYAVNEPAAFGARTALDAAGKADVMIVSIDGGCTGVRAVRDGKIAATSQQYPLKMAEQGVAAV
VDYVKDGTKVSGYVDTGTTLIADDRQPGIPSEGVEYGLANCWG

Sequences:

>Translated_363_residues
MSDQEGMRWTASGRVSGSPRRRAIAALVLVLAAALVLFRCGGSSVQVTDGRQGSGGNPTVGLITKSYTNPFFVKMRDGAQ
QAAREQKVELLTATGRFDGDYASQVSAIENMVAAGARGILITPNDSKAIVPAIEQARHRGVLVIALDVPTDPESAVDALF
STDNFKAGILIGEYARAAMGDTPARIATMDVSSHITGGGLLRHNGFLVGFGALDVTVSETQQATPPSVVCSRDSKGDQAK
GRTAMADCLRTDPDINLVYAVNEPAAFGARTALDAAGKADVMIVSIDGGCTGVRAVRDGKIAATSQQYPLKMAEQGVAAV
VDYVKDGTKVSGYVDTGTTLIADDRQPGIPSEGVEYGLANCWG
>Mature_362_residues
SDQEGMRWTASGRVSGSPRRRAIAALVLVLAAALVLFRCGGSSVQVTDGRQGSGGNPTVGLITKSYTNPFFVKMRDGAQQ
AAREQKVELLTATGRFDGDYASQVSAIENMVAAGARGILITPNDSKAIVPAIEQARHRGVLVIALDVPTDPESAVDALFS
TDNFKAGILIGEYARAAMGDTPARIATMDVSSHITGGGLLRHNGFLVGFGALDVTVSETQQATPPSVVCSRDSKGDQAKG
RTAMADCLRTDPDINLVYAVNEPAAFGARTALDAAGKADVMIVSIDGGCTGVRAVRDGKIAATSQQYPLKMAEQGVAAVV
DYVKDGTKVSGYVDTGTTLIADDRQPGIPSEGVEYGLANCWG

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=275, Percent_Identity=31.2727272727273, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1790526, Length=273, Percent_Identity=24.9084249084249, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37783; Mature: 37652

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDQEGMRWTASGRVSGSPRRRAIAALVLVLAAALVLFRCGGSSVQVTDGRQGSGGNPTV
CCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEE
GLITKSYTNPFFVKMRDGAQQAAREQKVELLTATGRFDGDYASQVSAIENMVAAGARGIL
EEEEECCCCEEEEEECCCHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
ITPNDSKAIVPAIEQARHRGVLVIALDVPTDPESAVDALFSTDNFKAGILIGEYARAAMG
EECCCCCEEHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEHHHHHHCC
DTPARIATMDVSSHITGGGLLRHNGFLVGFGALDVTVSETQQATPPSVVCSRDSKGDQAK
CCCCEEEEEECCCCCCCCEEEEECCEEEEECEEEEEECCCCCCCCCCEEECCCCCCCCCC
GRTAMADCLRTDPDINLVYAVNEPAAFGARTALDAAGKADVMIVSIDGGCTGVRAVRDGK
CHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHCCCCCCCEEEEEECCCCCCEEEECCCC
IAATSQQYPLKMAEQGVAAVVDYVKDGTKVSGYVDTGTTLIADDRQPGIPSEGVEYGLAN
EEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEEECCCCCCCCCHHHHHCHHH
CWG
CCC
>Mature Secondary Structure 
SDQEGMRWTASGRVSGSPRRRAIAALVLVLAAALVLFRCGGSSVQVTDGRQGSGGNPTV
CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEE
GLITKSYTNPFFVKMRDGAQQAAREQKVELLTATGRFDGDYASQVSAIENMVAAGARGIL
EEEEECCCCEEEEEECCCHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
ITPNDSKAIVPAIEQARHRGVLVIALDVPTDPESAVDALFSTDNFKAGILIGEYARAAMG
EECCCCCEEHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEHHHHHHCC
DTPARIATMDVSSHITGGGLLRHNGFLVGFGALDVTVSETQQATPPSVVCSRDSKGDQAK
CCCCEEEEEECCCCCCCCEEEEECCEEEEECEEEEEECCCCCCCCCCEEECCCCCCCCCC
GRTAMADCLRTDPDINLVYAVNEPAAFGARTALDAAGKADVMIVSIDGGCTGVRAVRDGK
CHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHCCCCCCCEEEEEECCCCCCEEEECCCC
IAATSQQYPLKMAEQGVAAVVDYVKDGTKVSGYVDTGTTLIADDRQPGIPSEGVEYGLAN
EEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEEECCCCCCCCCHHHHHCHHH
CWG
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]